Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30094
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...    64   8e-11
U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical p...    48   7e-06
U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
 Frame = +2

Query: 260 DHDFIVNLDQRGQKDLPDK-----NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSE 421
           D++FI + +    K+  D+     N +   A+   NL+T ++KD  ++Y+L L DD+L E
Sbjct: 48  DYNFITSFENAKSKEERDQVLAANNANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQE 107

Query: 422 DKSRVKIFRE--TKFSGNVWQPFLNLLNRQDN 511
           DKSRV++F     +    VW  +L +L RQDN
Sbjct: 108 DKSRVELFHSAAARQKRTVWSQYLGILQRQDN 139



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +3

Query: 153 IDMIAATSVLQIRASEIRQTQINWQSYLQSQM 248
           +DM+ ATS LQ+ A E+R  + NW SY +SQM
Sbjct: 12  VDMLNATSRLQLEAQELRNNKPNWGSYFRSQM 43



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 511 FVQHMTARIIAKLACWHPQLMDKSDLHFYLSWA*R--FNSRTNARRKLTA 654
           F+ +  + IIAKLAC+    M+  DL +Y S+      NS TN     TA
Sbjct: 140 FIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTNDYMNTTA 189


>U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical
           protein F52E1.10 protein.
          Length = 451

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
 Frame = +2

Query: 260 DHDFIVNLDQRGQK----DLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDK 427
           D+DFIV   Q   +     +     +     F++L++ ISKD  ++Y L LIDD+L ED 
Sbjct: 41  DYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVHLMSQISKDDYVRYTLTLIDDMLREDV 100

Query: 428 SRVKIFRETK--FSGNVWQPFLNLLNRQD 508
           +R  IF +       + +  F+ LL+RQD
Sbjct: 101 TRTIIFEDVAVLLKRSPFSFFMGLLHRQD 129


>U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical
           protein K04A8.5 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 469 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 362
           V   FR+  Y H  FI+  N  ++  NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = -1

Query: 577 CPSAADASKLAWQ*CEQSCAGQIILTVQQIQEGLPNVAREFRLTKYLHPRFIFRKNVINE 398
           C     A K  W+ C  SCA      + Q     PN  +   +   +H +  FR N+I  
Sbjct: 11  CIDTEFAQKETWKDCVTSCAQNDTCVIAQANLTTPNECQLCSIQNLMHIQKRFRGNMIIA 70

Query: 397 HKNV 386
            K V
Sbjct: 71  LKTV 74


>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 268 FYRELRPARPKRSA*QESRCLCRSLSQPPDAYQQGP 375
           +++++RP RP +      +C C     PP +Y+Q P
Sbjct: 279 YHQDMRPVRPVQH--HRVQCCCFKFVWPPWSYEQAP 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,049
Number of Sequences: 27780
Number of extensions: 337937
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)