Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30092
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-7|AAL02444.1|  413|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>U40419-7|AAL02444.1|  413|Caenorhabditis elegans Hypothetical
           protein C27F2.10 protein.
          Length = 413

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 306 DELVIAHLSCLKALY-ASDYIEAYDPSEYMCGCCRKAINRDRKKRNWCLPVMY 461
           DE+V  HL  L  ++ A D I A      +     K I + RK  NW LP+ Y
Sbjct: 66  DEIVCLHLHVLYNIHVAQDLITAQSTQIQIIQLFNKEILQKRKDENWFLPIFY 118


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical protein
            M01F1.7 protein.
          Length = 1034

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 201  HIV*TVVSKR*TCLQ*ESLSSDIATLVTGNC 293
            H++    S+R  C+Q ES SS +A L +G C
Sbjct: 965  HVISVAGSRRRNCVQIESYSSHLAALNSGQC 995


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
            protein M01F1.7 protein.
          Length = 1034

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 201  HIV*TVVSKR*TCLQ*ESLSSDIATLVTGNC 293
            H++    S+R  C+Q ES SS +A L +G C
Sbjct: 965  HVISVAGSRRRNCVQIESYSSHLAALNSGQC 995


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 288 NCVAPLDELVIAHLSCLKALYASDYIEAYDPSE 386
           NC+   D  +  HL+CL  L   D + AY PS+
Sbjct: 576 NCIQ--DHFIQCHLTCLSILTFCDQMHAYAPSK 606


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 288 NCVAPLDELVIAHLSCLKALYASDYIEAYDPSE 386
           NC+   D  +  HL+CL  L   D + AY PS+
Sbjct: 576 NCIQ--DHFIQCHLTCLSILTFCDQMHAYAPSK 606


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,542,576
Number of Sequences: 27780
Number of extensions: 383972
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)