Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30085
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000194-6|ABC71793.1|  385|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical ...    31   1.4  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    30   1.8  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    30   1.8  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclas...    28   9.6  
U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclas...    28   9.6  
U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      28   9.6  

>AF000194-6|ABC71793.1|  385|Caenorhabditis elegans Hypothetical
           protein ZC328.3b protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +1

Query: 322 SPCKNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KEK 501
           S  KNN+ +  T +S +  +  +ED  TH S++   + +  +E   P +E   R +  ++
Sbjct: 20  STLKNNNDKDNTSQSSTSSDFHDEDSATHFSEQFEQEDEIIEEVPCPCSEHFGRLIMDKE 79

Query: 502 VKFPIKE 522
            K  +++
Sbjct: 80  FKVSVEK 86


>AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical
           protein ZC328.3a protein.
          Length = 616

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +1

Query: 322 SPCKNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KEK 501
           S  KNN+ +  T +S +  +  +ED  TH S++   + +  +E   P +E   R +  ++
Sbjct: 251 STLKNNNDKDNTSQSSTSSDFHDEDSATHFSEQFEQEDEIIEEVPCPCSEHFGRLIMDKE 310

Query: 502 VKFPIKE 522
            K  +++
Sbjct: 311 FKVSVEK 317


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 328 CKNNDYE--PVTPKSESQLESDNEDRRTHLSKRKHLDSDD 441
           C +++Y   PVT   E   + + ED     S R++LD DD
Sbjct: 83  CDDSEYSRRPVTTLHEEDFDEEEEDEFEDASDRRNLDEDD 122


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 328 CKNNDYE--PVTPKSESQLESDNEDRRTHLSKRKHLDSDD 441
           C +++Y   PVT   E   + + ED     S R++LD DD
Sbjct: 116 CDDSEYSRRPVTTLHEEDFDEEEEDEFEDASDRRNLDEDD 155


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 238 LFFF*LLDVTKNFRSANRISWPAWSTNSYVNGKSSFALVHSF 113
           +F++ L+ ++ NF   N   W  W++ S  + +S  AL+ SF
Sbjct: 63  MFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISF 104


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 322 SPCKNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDDSD 447
           S  KN   EP   KS+ Q ESD+E+    +S  +     DSD
Sbjct: 364 SSSKNKVAEPSFKKSKRQEESDDEESDVEMSNSESEGDQDSD 405


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 397 RRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KEKVKFPIK 519
           +R+   +  H+DSD +DET T   +     L K  +K+PIK
Sbjct: 781 KRSETPELDHIDSDTADET-TKSEKSPFGSLNKSSIKYPIK 820


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 397 RRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KEKVKFPIK 519
           +R+   +  H+DSD +DET T   +     L K  +K+PIK
Sbjct: 786 KRSETPELDHIDSDTADET-TKSEKSPFGSLNKSSIKYPIK 825


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 397 RRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KEKVKFPIK 519
           +R+   +  H+DSD +DET T   +     L K  +K+PIK
Sbjct: 796 KRSETPELDHIDSDTADET-TKSEKSPFGSLNKSSIKYPIK 835


>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 720 WSILDLLESFHYSCLSTLCTLILEVEIFDE 631
           W +L ++ S+    L  +C LI+E  +FD+
Sbjct: 15  WGVLSVVSSWQDRLLRDICALIVECVLFDK 44


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 331 KNNDYEP--VTPKSESQLESDNEDRRTHLSKRKHL 429
           +N + EP  V PK+E  L SDNED++  + + K L
Sbjct: 589 ENEENEPPVVAPKAELLL-SDNEDKKQRIKEEKQL 622


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 364 SESQLESDNEDRRTHLSKRKH--LDSDDSDETYTPFAEQTSRXL*KEKVKFPIK 519
           SE+  E DN ++  HLSK  +  LD ++S E     ++       K  V FP +
Sbjct: 733 SENSREEDNANQNQHLSKMSNPELDEEESKEEIEEVSDSEIEIDNKIPVTFPTR 786


>U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoforma protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 331 KNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDD 441
           + +DYEPV  K  +     ++D+ T +   ++LD D+
Sbjct: 581 RESDYEPVVAKKHAYRPRLDDDKCTFMRSLRNLDQDN 617


>U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoformb protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 331 KNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDD 441
           + +DYEPV  K  +     ++D+ T +   ++LD D+
Sbjct: 581 RESDYEPVVAKKHAYRPRLDDDKCTFMRSLRNLDQDN 617


>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 346 EPVTPKSESQLESD-NEDRRTHLSKRKHLDSDDSDETYTPFAEQ 474
           EP   KS   LES   E   + LSKRK+ +SDD D T   F+ Q
Sbjct: 30  EPNPAKSNKGLESKMRESILSRLSKRKNSESDD-DTTEQRFSIQ 72


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 331 KNNDYEP--VTPKSESQLESDNEDRRTHLSKRKHL 429
           +N + EP  V PK+E  L SDNED++  + + K L
Sbjct: 589 ENEENEPPVVAPKAELLL-SDNEDKKQRIKEEKQL 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,299
Number of Sequences: 27780
Number of extensions: 418294
Number of successful extensions: 1647
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)