Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and cap...    29   5.5  
AL132948-28|CAD31828.1|  263|Caenorhabditis elegans Hypothetical...    28   9.7  

>AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 4 protein.
          Length = 756

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 798 WI*ILLTTHLKFWFDVQRFKTQAPFEVSCFQ 706
           WI I+L T LKF F  + FK+  PF +  ++
Sbjct: 508 WIVIVLLTSLKFLFFCRGFKSVGPFVLMLYK 538


>AL132948-28|CAD31828.1|  263|Caenorhabditis elegans Hypothetical
           protein Y39B6A.36 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 320 DLPALEGIVPIPPAEADDGLVNDSTMSELRSRTTPTSQFSSLHFIASTAMGAKSIEKRG 144
           +L   +G++   P E  +G  + ST+++  +   PT     LH + S  M   S +K+G
Sbjct: 51  ELHTAKGLIHPKPKEPTEG--SSSTVTQPEASEIPTEYSFILHDVKSQTMSVLSEDKQG 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,082
Number of Sequences: 27780
Number of extensions: 318679
Number of successful extensions: 951
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)