Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30079
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    36   0.029
U00065-4|AAA50736.1|  103|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    28   7.6  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   7.6  

>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
 Frame = -2

Query: 400 CTSWGSCPLGSVCRHRP--------CPNHRRLPFRLHR---CPPGEGCSAGDSC 272
           C    SCP+G +C  R         CPN  R   R +R   CPPG GC+    C
Sbjct: 653 CGMANSCPIGYICEGRGCCLEPLPLCPNGGRASMRCYRGAECPPGYGCTPLGGC 706


>U00065-4|AAA50736.1|  103|Caenorhabditis elegans Hypothetical
           protein D1044.4 protein.
          Length = 103

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 424 SDGVGDVCDNCPRVRNTNQEDTDKD 498
           S+ V D C++CP+ RN N E  D+D
Sbjct: 40  SEQVADPCNHCPKPRNYNSECKDED 64


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 681  NFQDSLPQLGDSKGFWIIDGPFGRPP 758
            NF  S+P  GD+ G  I+  P+G+ P
Sbjct: 1615 NFFKSIPNQGDTPGCRIVSAPYGQLP 1640


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 681  NFQDSLPQLGDSKGFWIIDGPFGRPP 758
            NF  S+P  GD+ G  I+  P+G+ P
Sbjct: 1615 NFFKSIPNQGDTPGCRIVSAPYGQLP 1640


>Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical
           protein C26C6.1b protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 681 NFQDSLPQLGDSKGFWIIDGPFGRPP 758
           NF  S+P  GD+ G  I+  P+G+ P
Sbjct: 245 NFFKSIPNQGDTPGCRIVSAPYGQLP 270


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 319 LHRCPPGEGCSAGDSCH 269
           L  C PG+GC  G  CH
Sbjct: 334 LSPCAPGQGCGTGSYCH 350


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 319 LHRCPPGEGCSAGDSCH 269
           L  C PG+GC  G  CH
Sbjct: 334 LSPCAPGQGCGTGSYCH 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,316
Number of Sequences: 27780
Number of extensions: 329697
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)