Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30075
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical...    28   8.8  
AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical...    28   8.8  
AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical...    28   8.8  
AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical...    28   8.8  

>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 210 FDMFFCKIHLLCHDWCCNSFHRYYN 136
           +  F   + + C ++CCN+   YYN
Sbjct: 180 YGQFDAVVTIFCVEYCCNTLSEYYN 204


>AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1d protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 EHPIAGTPRSRASFTRRFADRTLNYNRVFRSVKGRIPSNPKKKHLN 655
           ++P+  TPRS   F  R       +N  F+S++ R+ S PK   +N
Sbjct: 106 KYPMYFTPRSVIDFQMRNNYWIPRHNNTFKSLRTRLYSLPKTVSIN 151


>AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1b protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 EHPIAGTPRSRASFTRRFADRTLNYNRVFRSVKGRIPSNPKKKHLN 655
           ++P+  TPRS   F  R       +N  F+S++ R+ S PK   +N
Sbjct: 106 KYPMYFTPRSVIDFQMRNNYWIPRHNNTFKSLRTRLYSLPKTVSIN 151


>AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1c protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 EHPIAGTPRSRASFTRRFADRTLNYNRVFRSVKGRIPSNPKKKHLN 655
           ++P+  TPRS   F  R       +N  F+S++ R+ S PK   +N
Sbjct: 111 KYPMYFTPRSVIDFQMRNNYWIPRHNNTFKSLRTRLYSLPKTVSIN 156


>AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1a protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 518 EHPIAGTPRSRASFTRRFADRTLNYNRVFRSVKGRIPSNPKKKHLN 655
           ++P+  TPRS   F  R       +N  F+S++ R+ S PK   +N
Sbjct: 109 KYPMYFTPRSVIDFQMRNNYWIPRHNNTFKSLRTRLYSLPKTVSIN 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,570
Number of Sequences: 27780
Number of extensions: 253453
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)