Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30071
(477 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 146 9e-36
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 9e-36
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 146 9e-36
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 146 9e-36
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 1e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 83 1e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 83 1e-16
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 79 2e-15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 56 1e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 56 1e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 56 1e-08
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 56 1e-08
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 56 1e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.015
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.046
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.14
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.14
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.19
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.43
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.43
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.43
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.43
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.57
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 0.99
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 5.3
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 146 bits (353), Expect = 9e-36
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 127 bits (307), Expect = 4e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
G TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 429 NG 434
NG
Sbjct: 130 NG 131
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 9e-36
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 100 bits (239), Expect = 6e-22
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
G TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 146 bits (353), Expect = 9e-36
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 127 bits (307), Expect = 4e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
G TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 429 NG 434
NG
Sbjct: 130 NG 131
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 146 bits (353), Expect = 9e-36
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 127 bits (307), Expect = 4e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
G TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 429 NG 434
NG
Sbjct: 130 NG 131
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 1e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAER 243
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 232 KAERE 246
+ ERE
Sbjct: 227 EEERE 231
Score = 82.6 bits (195), Expect = 1e-16
Identities = 37/62 (59%), Positives = 44/62 (70%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
G T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 233 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFEN 292
Query: 429 NG 434
G
Sbjct: 293 GG 294
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 232 KAERE 246
+ ERE
Sbjct: 245 EEERE 249
Score = 82.6 bits (195), Expect = 1e-16
Identities = 37/62 (59%), Positives = 44/62 (70%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 428
G T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 251 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFEN 310
Query: 429 NG 434
G
Sbjct: 311 GG 312
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +1
Query: 46 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 225
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 226 KLKAERE 246
ERE
Sbjct: 164 TNDEERE 170
Score = 74.5 bits (175), Expect = 4e-14
Identities = 38/96 (39%), Positives = 55/96 (57%)
Frame = +3
Query: 147 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*AGYTIDIALWKFETSKYYVTIIDAPGH 326
+ Y RE +E G + L C+ + G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEE--REKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 327 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 148
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 56.0 bits (129), Expect = 1e-08
Identities = 28/55 (50%), Positives = 35/55 (63%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 413
G TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME 147
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 56.0 bits (129), Expect = 1e-08
Identities = 28/55 (50%), Positives = 35/55 (63%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 413
G TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME 147
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 35.9 bits (79), Expect = 0.015
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 249 GYTIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G T I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.046
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI 144
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G T+ A + + + +ID PGH DF + D V+++ G
Sbjct: 75 GITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGID 147
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 249 GYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
G TI A + + IID PGH DF + D AVL++ G G
Sbjct: 97 GITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 0.99
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 183
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.5 bits (68), Expect = 0.32
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
Y + +ID PGH DF + + D +L+VAA G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 213 LGIGQTKG*A*AGYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
L I + +G + + I + Y + IID PGH +F M AD V++V
Sbjct: 174 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 233
Query: 393 AGTG 404
A G
Sbjct: 234 AHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 213 LGIGQTKG*A*AGYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
L I + +G + + I + Y + IID PGH +F M AD V++V
Sbjct: 49 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 108
Query: 393 AGTG 404
A G
Sbjct: 109 AHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 0.99
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+ +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 300 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 395
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 332 ISVSRSIND-GNIVLASFELPESNIDCIP 249
+S ++I+D GNI+ +F P DCIP
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIP 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,869
Number of Sequences: 27780
Number of extensions: 216053
Number of successful extensions: 634
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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