Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30065
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    72   2e-13
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    65   3e-11
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    31   0.39 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    31   0.39 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAG 238
           MRYV+AYLLAVLGG   P   D++ ILS+VG++AD E  K V++ L GK VE+LIA G
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEG 58


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 29/63 (46%), Positives = 42/63 (66%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 245 KLS 253
           KLS
Sbjct: 61  KLS 63


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 110 TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 229
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 110 TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 229
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -3

Query: 225  SCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT*RIF*VLI 49
            S +T+ P   ++T +   P +S PT   + ST+ AA V+    T+S  + +  +F VLI
Sbjct: 2254 SVATAGPTGPILTVV---PVSSAPTSGAVSSTATAAPVITTTKTSSVLSVSFSMFIVLI 2309


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 6   FKTNVILSALHVSCQLGLKKCVTWPRIYWLC 98
           F+   +    H  CQ G  +CV  PR  W C
Sbjct: 45  FRRVFVTHKQHFKCQTGQNQCVPDPRGRWNC 75


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 225 SCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 79
           S ST  P+S+ +   + +   SIP+     S+   +  + PPS+ASK A
Sbjct: 436 SISTVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484


>AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical
           protein Y9C9A.12 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 28  RHYTFRVN*DLKNALRGRVFTGCAGWQDHASC 123
           +H+T R++ D+KN  R + FT      +  SC
Sbjct: 98  KHFTIRISDDIKNKNRDQCFTRILNTLNSKSC 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,600
Number of Sequences: 27780
Number of extensions: 134850
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)