Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30064
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58734-1|AAB52503.1|  108|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine re...    30   2.4  
Z47067-1|CAA87328.1|  776|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U58734-1|AAB52503.1|  108|Caenorhabditis elegans Hypothetical
           protein T27A10.5 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 740 KWTFWWLENKFKLEPNVYTI 681
           K+  +WLEN+ KLE NVY +
Sbjct: 31  KYLLYWLENELKLEVNVYEL 50


>AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 3 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 726 PKSPFNDLGPYRKYFRVAWV*ISKFYILNFLKRK 827
           P S F ++GPY    ++    +  ++ILN LKR+
Sbjct: 248 PFSSFKNIGPYVYIIKLVGSAVESYFILNILKRR 281


>Z47067-1|CAA87328.1|  776|Caenorhabditis elegans Hypothetical
           protein C43C3.1 protein.
          Length = 776

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 121 ESQYKLLKN*LLHTIELLRE*NKRS*TSNYVFLVK*KKAIPNAFQ 255
           + +Y L KN LLH+I  + E NK+   + + + V+ + A  + F+
Sbjct: 179 QQEYLLRKNELLHSIRNMEEDNKKIIMNEHKYFVRDRNADRHVFR 223


>Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 681 ITLYKKIWEPW*MDLYSFFPT 619
           +TLY K+W  +   LY FF T
Sbjct: 343 VTLYSKVWREFDRGLYQFFKT 363


>Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 681 ITLYKKIWEPW*MDLYSFFPT 619
           +TLY K+W  +   LY FF T
Sbjct: 343 VTLYSKVWREFDRGLYQFFKT 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,308
Number of Sequences: 27780
Number of extensions: 372681
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)