Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20021
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   169   7e-43
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   167   5e-42
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    27   7.0  
L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  169 bits (412), Expect = 7e-43
 Identities = 90/148 (60%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
 Frame = +1

Query: 37  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCG 216
           K  E  E  ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTG +  F +      
Sbjct: 6   KQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 217 LLVSVVMKRLLSMYSPRA-KAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIK 390
                  +++    + R  KAEEIL +  KV+EYEL ++NFS TGNFGFG+QEHIDLGIK
Sbjct: 66  TFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIK 125

Query: 391 YDPSIGIYGLDFYVVLCRPGFNVAHRRR 474
           YDPSIGIYG+DFYVVL R G  +A RRR
Sbjct: 126 YDPSIGIYGMDFYVVLDRAGRRIAKRRR 153


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  167 bits (405), Expect = 5e-42
 Identities = 89/148 (60%), Positives = 104/148 (70%), Gaps = 2/148 (1%)
 Frame = +1

Query: 37  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCG 216
           K  E  E   +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTG +  F +      
Sbjct: 6   KQTEIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 217 LLVSVVMKRLLSMYSPRA-KAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIK 390
                  +++    + R  KAEEIL +  KV+EYEL ++NFS TGNFGFG+QEHIDLGIK
Sbjct: 66  TFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIK 125

Query: 391 YDPSIGIYGLDFYVVLCRPGFNVAHRRR 474
           YDP IGIYG+DFYVVL R G  V+ RRR
Sbjct: 126 YDPGIGIYGMDFYVVLNRNGVRVSKRRR 153


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 416 DWTFTSYFAGQVSTL-HTEG 472
           DW FT  + GQV TL H EG
Sbjct: 64  DWYFTKNYKGQVPTLEHAEG 83


>L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical
           protein C02D5.3b protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 416 DWTFTSYFAGQVSTL-HTEG 472
           DW F+ ++ GQV TL H EG
Sbjct: 56  DWYFSKHYKGQVPTLEHDEG 75


>L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical
           protein C02D5.3a protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 416 DWTFTSYFAGQVSTL-HTEG 472
           DW F+ ++ GQV TL H EG
Sbjct: 56  DWYFSKHYKGQVPTLEHDEG 75


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 82  NLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCG 216
           N    KL L +  G+S D L+  +    QLT +S  FPR+   CG
Sbjct: 189 NFSTNKLILEVLNGKSKDTLSCTSC---QLTYSSQTFPRIHPSCG 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,391
Number of Sequences: 27780
Number of extensions: 220173
Number of successful extensions: 578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)