Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00017
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    71   9e-13
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    33   0.17 
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    33   0.17 
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 26/34 (76%), Positives = 34/34 (100%)
 Frame = +1

Query: 271 GFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPPG 372
           G+R+VVN+GK+GAQSV+HLH+H+LGGRQ+QWPPG
Sbjct: 97  GYRVVVNNGKDGAQSVFHLHLHVLGGRQLQWPPG 130



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/60 (43%), Positives = 35/60 (58%)
 Frame = +2

Query: 74  PCKFHLRRRTMRTFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAAQ 253
           P K          F+DV+PQAP H LVIP++ I  L  A D+D  L+G L++ A K+A Q
Sbjct: 32  PAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKLMVTASKVAKQ 91



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +3

Query: 39  DTIFGKILRKEIPANFIYEDEQCV 110
           DT+FGKI+RKEIPA  I+ED++ +
Sbjct: 20  DTLFGKIIRKEIPAKIIFEDDEAL 43


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +2

Query: 113 FNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAA 250
           F ++ P    HVLV P++ +P+L+  D TD +   DL IVA+K+ A
Sbjct: 321 FVNLKPVTDGHVLVSPKRVVPRLT--DLTDAE-TADLFIVAKKVQA 363



 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 268 TGFRLVVNDGKNGAQSVYHLHIHILGGR 351
           T   + V DGK+  Q+V H+HIHIL  R
Sbjct: 372 TSTTICVQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +2

Query: 113 FNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAA 250
           F ++ P    HVLV P++ +P+L+  D TD +   DL IVA+K+ A
Sbjct: 321 FVNLKPVTDGHVLVSPKRVVPRLT--DLTDAE-TADLFIVAKKVQA 363



 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 268 TGFRLVVNDGKNGAQSVYHLHIHILGGR 351
           T   + V DGK+  Q+V H+HIHIL  R
Sbjct: 372 TSTTICVQDGKDAGQTVPHVHIHILPRR 399


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 250 PAGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQMQ 360
           P  L  + F  ++ DGKN  QS+Y +    L G + Q
Sbjct: 580 PTNLKLSTFAKILEDGKNVTQSLYKVDFSYLNGLRRQ 616


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 170  IPQLSLADDTDEQLLGDLLIVARKLAAQQAWTRQASASLLTMERMAPKAFTTFTFI 337
            +PQL + +DTDE  L  LL+   K AA   + R+A A    + +   K FTT  +I
Sbjct: 1123 LPQLDVDEDTDEYRLRRLLLFGLKPAA-NVYFRRARA----IYKSITKEFTTRLYI 1173


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 68  RNPC---KFHLRRRTMRTFNDVNPQAPTHVLVIPRKPIP 175
           R PC   K  L+   ++  + V P+AP H+ + P+  IP
Sbjct: 787 RRPCTCRKLPLQSAQLQKVHVVTPKAPVHITIDPKVLIP 825


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 269 VLSRPAGQQVYGQQLEDLLTTVHQYH 192
           +LSRP+G  ++ ++L ++LT V   H
Sbjct: 317 MLSRPSGDHLFRRELNEILTPVSAVH 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,185
Number of Sequences: 27780
Number of extensions: 294156
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)