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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00016
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    95   3e-20
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    91   4e-19
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 42/57 (73%), Positives = 51/57 (89%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V+
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVK 57



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 41/57 (71%), Positives = 50/57 (87%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V+
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVK 57



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 72  SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 209
           S  KM+ K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 34  SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.4 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 220 CSPKPWKASMSVPDHQHRLWSG 285
           C P        + DH HRLWSG
Sbjct: 212 CLPAQHSGQRGLSDHNHRLWSG 233


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 187  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 77
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 187  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 77
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 108 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNV 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,924
Number of Sequences: 27780
Number of extensions: 172432
Number of successful extensions: 441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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