Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00010
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-44|AAK93864.2|  168|Caenorhabditis elegans Hypothetical...    99   2e-21
Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z73422-11|CAA97768.1|  423|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024817-44|AAK93864.2|  168|Caenorhabditis elegans Hypothetical
           protein Y54G2A.23 protein.
          Length = 168

 Score =   99 bits (238), Expect = 2e-21
 Identities = 40/67 (59%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
 Frame = +1

Query: 259 KKFCKGSKNKENRFCYYLGGLEESATGILGELSKPLSWSMPADKIC-EKLKKKDAQICDL 435
           ++ C+ ++NKEN+FC+Y+G L ESAT I+ E++KPLSWSMP +K+C EKLK KDAQIC+L
Sbjct: 52  REHCETTRNKENKFCFYIGALPESATSIMNEVTKPLSWSMPTEKVCLEKLKGKDAQICEL 111

Query: 436 RFDKQID 456
           ++DK +D
Sbjct: 112 KYDKPLD 118



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +3

Query: 513 DWDEVCDGCIEKTDFIKRIEELKPKYM 593
           +W EVC GC EK + IKRIEELKPKY+
Sbjct: 138 EWGEVCKGCTEKAELIKRIEELKPKYV 164



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +2

Query: 116 LLFLATAVQVVLSLREGDCEVCVKTVEKFAATLSDDVKKDPKKIEAGSKSSVKVQRTKKI 295
           L+ L + V VV S     CEVC K ++   A +    K  P  I    +   +  R K+ 
Sbjct: 4   LVLLISLVIVVASAAAPQCEVCKKVLDDVMAKVPAGDKSKPDAIGKVIREHCETTRNKEN 63

Query: 296 DF 301
            F
Sbjct: 64  KF 65


>Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 715 INLQIHCPYYITQKVCM-MLISQCEC**FT*CIYLV*RSDLPMYLGFNSSILLMKSVFS 542
           +++Q+HCP  I   V M  +I+QC     T  + L  RSD   Y G  S + + ++V +
Sbjct: 143 LDVQMHCPSVIRDSVAMASVIAQCSYNLQT--LDLKIRSDNAKYAGIPSDVKIRRNVMT 199


>Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 715 INLQIHCPYYITQKVCM-MLISQCEC**FT*CIYLV*RSDLPMYLGFNSSILLMKSVFS 542
           +++Q+HCP  I   V M  +I+QC     T  + L  RSD   Y G  S + + ++V +
Sbjct: 143 LDVQMHCPSVIRDSVAMASVIAQCSYNLQT--LDLKIRSDNAKYAGIPSDVKIRRNVMT 199


>Z73422-11|CAA97768.1|  423|Caenorhabditis elegans Hypothetical
           protein B0564.6b protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 715 INLQIHCPYYITQKVCM-MLISQCEC**FT*CIYLV*RSDLPMYLGFNSSILLMKSVFS 542
           +++Q+HCP  I   V M  +I+QC     T  + L  RSD   Y G  S + + ++V +
Sbjct: 41  LDVQMHCPSVIRDSVAMASVIAQCSYNLQT--LDLKIRSDNAKYAGIPSDVKIRRNVMT 97


>Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.6a protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 715 INLQIHCPYYITQKVCM-MLISQCEC**FT*CIYLV*RSDLPMYLGFNSSILLMKSVFS 542
           +++Q+HCP  I   V M  +I+QC     T  + L  RSD   Y G  S + + ++V +
Sbjct: 143 LDVQMHCPSVIRDSVAMASVIAQCSYNLQT--LDLKIRSDNAKYAGIPSDVKIRRNVMT 199


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 164 GDCEVCVKTVEKFAATLSDDVKKDPKKIEAGSKSSVKVQRTKKIDFVT 307
           G   V V  +   A+ ++D + +DPK + +G K     +    +DF +
Sbjct: 138 GSMMVAVGKITLLASAITDGMGRDPKALNSGQKRDAVKEVPSLLDFAS 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,583
Number of Sequences: 27780
Number of extensions: 312544
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)