Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00006
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 112 2e-25
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 111 3e-25
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 39 0.004
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 35 0.044
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 31 0.54
U70858-4|AAB09178.1| 294|Caenorhabditis elegans Serpentine rece... 31 0.94
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 30 1.6
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 2.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 2.2
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 2.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 2.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 2.2
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical ... 29 3.8
AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical... 29 3.8
Z68115-7|CAA92169.2| 302|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z50873-4|CAA90762.2| 302|Caenorhabditis elegans Hypothetical pr... 28 5.0
DQ645955-1|ABG36763.1| 302|Caenorhabditis elegans molting prote... 28 5.0
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical pr... 27 8.8
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 27 8.8
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 8.8
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 8.8
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 8.8
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 8.8
AL021387-1|CAE17853.1| 187|Caenorhabditis elegans Hypothetical ... 27 8.8
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 112 bits (270), Expect = 2e-25
Identities = 46/84 (54%), Positives = 73/84 (86%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+ELK+SL+ +F+QFG+I+ +++ + KMRGQA ++F+E+SSA+ ALR++QGFPFY KPMR
Sbjct: 22 DELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMR 81
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY++ DSD+I+++KGTF E+ ++
Sbjct: 82 IQYAREDSDVISRAKGTFVEKRQK 105
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +3
Query: 372 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
PN ILF +N+P+ T + +F+QFPG +EVR +PN D AF+E E
Sbjct: 141 PNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYE 187
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
+E S A++AL F+ITPT + + FA K
Sbjct: 188 SEDLSEPARQALDNFRITPTQQITVKFASK 217
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 111 bits (268), Expect = 3e-25
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+EL+KSL A+F QFG+I+ ++ +TLKMRGQA VIF+E+ +A+ A ++ GFPFY+KPMR
Sbjct: 22 DELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREALNGFPFYEKPMR 81
Query: 181 IQYSKIDSDIIAKSKGTFQERPKRPSYL--KVLMMGRKRK 294
IQ+++ DSD++A+ KGT+ +R P YL K+L + RK
Sbjct: 82 IQFAREDSDVVAQEKGTYIKR--EPKYLSEKILKKPKSRK 119
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +3
Query: 348 NNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
N + PPN+ILF TNLPD + ML ++FNQF G K++R+VPNR IAFVE +
Sbjct: 122 NGGDGPAPPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +Y IF +FG + I T + RG AFV++ +I A A + G+ ++ + + Y
Sbjct: 33 EEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLY 91
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/79 (24%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +1
Query: 25 AIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
A+FSQ+G++++I ++ T K +G AF+ +++ S +A+ + G + + +R+ +
Sbjct: 56 AVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH-- 113
Query: 196 IDSDIIAKSKGTFQERPKR 252
++ + K K + KR
Sbjct: 114 VEEYKVPKYKEDADDETKR 132
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 34.3 bits (75), Expect = 0.077
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++ L FS GQI ++ + +T + RG AF+ F E SA A+ M G F +P+R
Sbjct: 18 EEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLR 77
Query: 181 I 183
+
Sbjct: 78 V 78
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L+ +FSQFG I+++ ++ T + +G AFV + A A+ S+ G K +++ +
Sbjct: 390 LWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVF 448
>Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical
protein D2089.4b protein.
Length = 453
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 ELKKSLYAIFSQFGQILDIVAMKTL-KMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
E+K + A+F+ FG D++ +K L + A + + E A +AL + ++D+ +R
Sbjct: 268 EMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLIR 327
Query: 181 IQYSK 195
+ SK
Sbjct: 328 VAPSK 332
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 321 HGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGF--KEVRLVPNRHDI 494
H G N +N PP L L+N+P SE L +F + GF K + P H +
Sbjct: 358 HRFKKPGSKNYLNI-YPPCATLHLSNIPTSVSEEKLKEMFAE-AGFAVKAFKFFPKDHKM 415
Query: 495 AFVELE 512
A +LE
Sbjct: 416 ALCQLE 421
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 ELKKSLYAIFSQFGQILDIVAMKTL-KMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
E+K + A+F+ FG D++ +K L + A + + E A +AL + ++D+ +R
Sbjct: 430 EMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLIR 489
Query: 181 IQYSK 195
+ SK
Sbjct: 490 VAPSK 494
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 321 HGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGF--KEVRLVPNRHDI 494
H G N +N PP L L+N+P SE L +F + GF K + P H +
Sbjct: 520 HRFKKPGSKNYLNI-YPPCATLHLSNIPTSVSEEKLKEMFAE-AGFAVKAFKFFPKDHKM 577
Query: 495 AFVELE 512
A +LE
Sbjct: 578 ALCQLE 583
>U70858-4|AAB09178.1| 294|Caenorhabditis elegans Serpentine
receptor, class x protein33 protein.
Length = 294
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 637 IYT*NYMFYIT---LFLSKSNLHCMCWCYFESL*CFFSCCRLHFISNSTKAISCLF 479
IY Y YIT +F S+ ++C W + + C+ HF+S+ + I+ F
Sbjct: 52 IYLTVYFLYITPMIIFASQLMIYCSHWAGYVLIVCYEISIHTHFLSSVNRFIAVFF 107
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 13 KSLYAIFSQFGQILD--IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
KS+Y FS FG IL + +G FV F SA A+ + G DK + +
Sbjct: 159 KSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 13 KSLYAIFSQFGQILD--IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
KS+Y FS FG IL + +G FV F SA A+ + G DK + +
Sbjct: 159 KSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALR 141
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALR 141
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALR 141
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALR 141
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALR 141
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 172 PMRIQYSKIDSDIIAKSKGTFQERPKRPSYL 264
P+ +Y AK GT+QERPKR S L
Sbjct: 236 PIHDEYKMDQLVSYAKMNGTYQERPKRKSQL 266
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQG 153
E+++ + + + F +DIV + K RG AFV R ++ A V L G
Sbjct: 23 EQIRNLITQLAAPFEVSIDIVENGSRKHRGFAFVQCRSLAEANVLLAKFSG 73
>Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 550 RIQNNTNTCNEDYFC*EIV*CKTCNFKYK*IEK 648
R QN + TC++ C E + CKT + ++K +++
Sbjct: 744 RFQNISETCDQALECVEPIKCKTISLEFKFVKR 776
>AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical
protein W06D4.4 protein.
Length = 630
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 637 IYT*NYMFYITLFLSKSNLHCMC 569
IY+ N FY LF SKS +C+C
Sbjct: 308 IYSRNTNFYQLLFFSKSRSYCVC 330
>AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 550 RIQNNTNTCNEDYFC*EIV*CKTCNFKYK*IEK 648
R QN + TC++ C E + CKT + ++K +++
Sbjct: 744 RFQNISETCDQALECVEPIKCKTISLEFKFVKR 776
>Z68115-7|CAA92169.2| 302|Caenorhabditis elegans Hypothetical
protein F19H6.1 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 109 REISSATVALRSMQGFPFYDKPMRIQYS 192
R SS T A S+ G P+Y P RIQ S
Sbjct: 173 RFFSSKTTAAHSLVGTPYYMSPERIQES 200
>Z50873-4|CAA90762.2| 302|Caenorhabditis elegans Hypothetical
protein F19H6.1 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 109 REISSATVALRSMQGFPFYDKPMRIQYS 192
R SS T A S+ G P+Y P RIQ S
Sbjct: 173 RFFSSKTTAAHSLVGTPYYMSPERIQES 200
>DQ645955-1|ABG36763.1| 302|Caenorhabditis elegans molting protein
MLT-1 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 109 REISSATVALRSMQGFPFYDKPMRIQYS 192
R SS T A S+ G P+Y P RIQ S
Sbjct: 173 RFFSSKTTAAHSLVGTPYYMSPERIQES 200
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVELEMKCNL 527
E PP +LF+ L T++ L ++F++F +V +R AF+E + +
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSC 295
Query: 528 QQ 533
+Q
Sbjct: 296 EQ 297
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVELEMKCNL 527
E PP +LF+ L T++ L ++F++F +V +R AF+E + +
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSC 295
Query: 528 QQ 533
+Q
Sbjct: 296 EQ 297
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVELEMKCNL 527
E PP +LF+ L T++ L ++F++F +V +R AF+E + +
Sbjct: 167 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSC 226
Query: 528 QQ 533
+Q
Sbjct: 227 EQ 228
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 384 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 476
LFL NLP T E L LF ++ EV++V
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVV 311
>Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical
protein F36D1.3 protein.
Length = 329
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 327 IPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLF 440
IP GIL ++ A+ PNQ+L L L S +SMLF
Sbjct: 87 IPATGILTSICAQIAPNQVLKLPYLIAFISS-YVSMLF 123
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 31 FSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKID 201
F+ FG IL + T + FV + SAT A+ +M GF K +++Q K+D
Sbjct: 355 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 413
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 31 FSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKID 201
F+ FG IL + T + FV + SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 31 FSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKID 201
F+ FG IL + T + FV + SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 31 FSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKID 201
F+ FG IL + T + FV + SAT A+ +M GF K +++Q K+D
Sbjct: 448 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 506
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 31 FSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKID 201
F+ FG IL + T + FV + SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>AL021387-1|CAE17853.1| 187|Caenorhabditis elegans Hypothetical
protein H01A20.2 protein.
Length = 187
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITF-AKK*CNVKHVILSINKLR 646
N+M E L K+ PT+A +F A V HV + +N+L+
Sbjct: 81 NDMMKKTGSEPLDLSKLPPTYAAAFSFLAPANEKVSHVTVDVNQLK 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,091
Number of Sequences: 27780
Number of extensions: 305008
Number of successful extensions: 697
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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