Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0208.Seq
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   2.2  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   2.2  
Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AY728060-1|AAU43721.1|  277|Caenorhabditis elegans cadmium-induc...    28   6.7  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   8.9  

>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 282 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 416
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 282 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 416
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.12 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -1

Query: 274 KPVLYILEILQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHP 95
           K  +Y+ +  +  +C    P+  +   LC+ YNI ++ +V S + R    +  F ++   
Sbjct: 43  KDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESSMARSRNGTLPFIELNGE 101

Query: 94  H 92
           H
Sbjct: 102 H 102


>AY728060-1|AAU43721.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-6 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -1

Query: 274 KPVLYILEILQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHP 95
           K  +Y+ +  +  +C    P+  +   LC+ YNI ++ +V S + R    +  F ++   
Sbjct: 43  KDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESSMARSRNGTLPFIELNGE 101

Query: 94  H 92
           H
Sbjct: 102 H 102


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 252
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,592
Number of Sequences: 27780
Number of extensions: 343606
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)