Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0206.Seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    70   1e-12
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   5.4  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 33/61 (54%), Positives = 36/61 (59%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPXXXXXXXXXXXXXXXXNMCRXXRXFAPTKPWRRWHRRVNLRQR 433
           Q SAESWGTGRAVARIP                NMCR    FAP K +RRWHR VN+ Q+
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 434 R 436
           R
Sbjct: 120 R 120



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 81  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 129 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 28
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,069
Number of Sequences: 27780
Number of extensions: 201593
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)