Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0200.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   6.7  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    28   6.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   6.7  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 242
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 242
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 258 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 365
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +3

Query: 12   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 179
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 180  KSEVITNVVNKLIRNNKMNCMEYAYN 257
            + E   N++N  +      C+E AY+
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAYD 1005


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 DGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNT 523
           D KD+ +P VS KL+AL + NK  FK       NT
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 153


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 DGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNT 523
           D KD+ +P VS KL+AL + NK  FK       NT
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 644


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +3

Query: 12   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 179
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 180  KSEVITNVVNKLIRNNKMNCMEYAYN 257
            + E   N++N  +      C+E AY+
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAYD 1005


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 270 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 365
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,476
Number of Sequences: 27780
Number of extensions: 296405
Number of successful extensions: 944
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)