SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0195.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    83   2e-16
U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical p...    33   0.24 
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    30   1.7  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    30   2.2  
Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    29   3.9  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    29   3.9  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    29   3.9  
Z82259-8|CAC70072.3|  410|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    28   8.9  

>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
 Frame = +2

Query: 248 EYLRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKW 427
           E  R  I+ I+  CAI +P + T+Y TLVGLLN+KN+NFGG+ V+ ++   ++ L   K+
Sbjct: 62  EKYRASIIDIIAGCAIYLPNRVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQKY 121

Query: 428 NAARYCLRFIADLVNCHVLAASSLLTL*RH**ILLMKMEYLTSEGIGLYL-AVLSALPWV 604
             A+    F+ DL N  VL A S+        I     E +       Y+  VL  LPW+
Sbjct: 122 QEAQNLAIFLCDLGNSGVLTAQSIGEYLES-FIAAAFEENMPQVRNDYYIQTVLRCLPWI 180

Query: 605 GREXYXKKXSQLDHLLVTIEGFLQ 676
           G+E   K   Q++++   I  +L+
Sbjct: 181 GKELTEKAPEQMENIGEAIGKYLE 204



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 60  MNRRRGHDDEEGYERLHRKRRRVSENQEIEDRLESLILRVG 182
           M+RRR  DDE+  E   ++RR     +++E +L+ +I +VG
Sbjct: 1   MSRRRQFDDED--EVQMKRRRGAPLIEDVEKKLQGVIGKVG 39


>U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical
           protein C32B5.5 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = -2

Query: 265 FNSKVLKSASSTLANPSRLLSKLELLFSPTLKIKDSKRSSISWFSDTRRLFRWRRSYPSS 86
           F+S+ L +ASS +AN    LS ++L F   LK  ++  +SI      R+  +W    P++
Sbjct: 142 FDSRSLSAASSLIANSCLPLSLIKLPFKSLLKTNNNPITSIV----NRKTKKWHFKAPTT 197

Query: 85  SSCPLRRFI 59
           +   LRR +
Sbjct: 198 APHNLRRVL 206


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/95 (24%), Positives = 45/95 (47%)
 Frame = +2

Query: 302 PEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFIADLVNCHV 481
           P    +YA L  ++N+K  + G   +  ++  FK + +          ++FIA L+N  V
Sbjct: 240 PGFSNVYAALAAVINSKFPHVGELLLRRLIVQFKRSFRRNDRGVTVNVIKFIAHLINQQV 299

Query: 482 LAASSLLTL*RH**ILLMKMEYLTSEGIGLYLAVL 586
             A  +L L     I+++ +E  T + + + +A L
Sbjct: 300 --AHEVLAL----EIMILMLEEPTDDSVEVAIAFL 328


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/95 (24%), Positives = 45/95 (47%)
 Frame = +2

Query: 302 PEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFIADLVNCHV 481
           P    +YA L  ++N+K  + G   +  ++  FK + +          ++FIA L+N  V
Sbjct: 240 PGFSNVYAALAAVINSKFPHVGELLLRRLIVQFKRSFRRNDRGVTVNVIKFIAHLINQQV 299

Query: 482 LAASSLLTL*RH**ILLMKMEYLTSEGIGLYLAVL 586
             A  +L L     I+++ +E  T + + + +A L
Sbjct: 300 --AHEVLAL----EIMILMLEEPTDDSVEVAIAFL 328


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 350 KNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFIADLVN 472
           +N+NF  + VD + K  K   + G +  A  CL +  +LVN
Sbjct: 119 QNHNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVN 159


>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 524 ILLMKMEYLTSEGIGLYLAVLSALPWVGREXYXKKXSQLDHLLV 655
           IL +    L S G G+ L ++ ALP   RE Y +   +LD   V
Sbjct: 130 ILFISSIVLISAGCGILLVIIQALPLEIREKYYRINLELDEYSV 173


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 524 ILLMKMEYLTSEGIGLYLAVLSALPWVGREXYXKKXSQLDHLLV 655
           IL +    L S G G+ L ++ ALP   RE Y +   +LD   V
Sbjct: 130 ILFISSIVLISAGCGILLVIIQALPLEIREKYYRINLELDEYSV 173


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 69  RRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 167
           ++ H++EE  + L  ++RRV E ++IE  L  L
Sbjct: 71  KKRHEEEEAAKLLDYEQRRVLEKEQIEQELREL 103


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 69  RRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 167
           ++ H++EE  + L  ++RRV E ++IE  L  L
Sbjct: 71  KKRHEEEEAAKLLDYEQRRVLEKEQIEQELREL 103


>Z82259-8|CAC70072.3|  410|Caenorhabditis elegans Hypothetical
           protein C28D4.9 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -2

Query: 322 IDCTFLGHADSTIR*YP*YFNSKVLKSASSTLANPSRLLSKLELLFSPTLKIKDSKRSSI 143
           ++ TF    D  +  +    N ++  S  S L NP ++ ++ +L +  T ++ D     +
Sbjct: 146 VETTFCPEFDDLVARFGSMCNVRI--SLQSALENPEKVATRTKLEWGNTSRLADIHDLKV 203

Query: 142 SWFSDTRRLFRWRRSYPSS 86
           +W     R F W   Y SS
Sbjct: 204 TWC----RTFVWFHDYLSS 218


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 18  REKSKICDTHSDFIMNRRR-GHDDEEGYERLHRKRRRVSENQEIEDRLES 164
           RE    CD + D ++ R     DDEEG   + +K     E ++ +DR ++
Sbjct: 488 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKDGNECEGEDNKDRQDT 537


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 18  REKSKICDTHSDFIMNRRR-GHDDEEGYERLHRKRRRVSENQEIEDRLES 164
           RE    CD + D ++ R     DDEEG   + +K     E ++ +DR ++
Sbjct: 493 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKDGNECEGEDNKDRQDT 542


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 18  REKSKICDTHSDFIMNRRR-GHDDEEGYERLHRKRRRVSENQEIEDRLES 164
           RE    CD + D ++ R     DDEEG   + +K     E ++ +DR ++
Sbjct: 488 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKDGNECEGEDNKDRQDT 537


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 18  REKSKICDTHSDFIMNRRR-GHDDEEGYERLHRKRRRVSENQEIEDRLES 164
           RE    CD + D ++ R     DDEEG   + +K     E ++ +DR ++
Sbjct: 493 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKDGNECEGEDNKDRQDT 542


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 69  RRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 167
           ++ H++EE  + L  ++RRV E +++E  L  L
Sbjct: 80  KKRHEEEEAAKLLDYEQRRVLEKEQMEQELREL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,829
Number of Sequences: 27780
Number of extensions: 341956
Number of successful extensions: 1033
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -