Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0068.Seq
         (978 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical ...    43   3e-04
Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...    43   4e-04
U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    29   6.7  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    29   6.7  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      29   6.7  

>AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical
           protein F23H11.3 protein.
          Length = 321

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TKV VQGFTG+QGTFHS Q L+Y
Sbjct: 35  TKVIVQGFTGRQGTFHSKQMLEY 57



 Score = 37.9 bits (84), Expect = 0.011
 Identities = 31/85 (36%), Positives = 37/85 (43%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTTYYWA*AK 768
           S+L+GPNCPGIIA  +C                  +VSRSG +   EA H TT       
Sbjct: 144 SRLLGPNCPGIIASGDCKIGIMPG--HIHKKGCIGIVSRSGTL-TYEAVHQTTTVG--LG 198

Query: 769 LLWCRXWRGXPSTGTRLSLTCXEVF 843
              C    G P  GT   + C EVF
Sbjct: 199 QTRCIGIGGDPFNGTNF-IDCLEVF 222



 Score = 36.7 bits (81), Expect = 0.025
 Identities = 25/79 (31%), Positives = 33/79 (41%)
 Frame = +3

Query: 339 LLERVSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXIDVPPPGXAAGXVXXXXAXMPSVX 518
           L+  VSP KAG  HLG P FG               I VP  G A        A +  + 
Sbjct: 61  LVGGVSPNKAGQTHLGLPVFGSVAEAKDRTGADATVIYVPAAGAARAIHEAMDAEIGLIV 120

Query: 519 ALQKVCHRHXXLRVKHALL 575
           A+ +   +   +RVK+ LL
Sbjct: 121 AITEGIPQQDMVRVKNRLL 139


>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TKV VQGFTGKQGTFH  Q L+Y
Sbjct: 34  TKVIVQGFTGKQGTFHGKQMLEY 56



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 30/85 (35%), Positives = 38/85 (44%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTTYYWA*AK 768
           ++LVGPNCPGII+ ++C                  +VSRSG +   EA H TT       
Sbjct: 143 TRLVGPNCPGIISADQCKIGIMPG--HIHKRGCIGIVSRSGTL-TYEAVHQTTQVGFGQT 199

Query: 769 LLWCRXWRGXPSTGTRLSLTCXEVF 843
           L  C    G P  GT   + C  VF
Sbjct: 200 L--CVGIGGDPFNGTNF-IDCLNVF 221



 Score = 36.7 bits (81), Expect = 0.025
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 336 KLLERVSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXIDVPPPGXAAGXVXXXXAXMPSV 515
           K++  V+  KAGTEHLG P F                I VP     +       A +P V
Sbjct: 59  KVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLV 118

Query: 516 XALQKVCHRHXXLRVKHALL 575
             + +   +H  +RVK  LL
Sbjct: 119 VCITEGIPQHDMVRVKSRLL 138


>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 478 PAAXPGGGTSITEALAPVPAFASLT 404
           PAA   GG S T  LA  PA AS+T
Sbjct: 577 PAAQTLGGVSTTTGLAATPALASMT 601


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 478 PAAXPGGGTSITEALAPVPAFASLT 404
           PAA   GG S T  LA  PA AS+T
Sbjct: 577 PAAQTLGGVSTTTGLAATPALASMT 601


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 478 PAAXPGGGTSITEALAPVPAFASLT 404
           PAA   GG S T  LA  PA AS+T
Sbjct: 577 PAAQTLGGVSTTTGLAATPALASMT 601


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,859,450
Number of Sequences: 27780
Number of extensions: 315867
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)