Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0037x.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-5|CAB60597.1|  258|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL132865-5|CAB60597.1|  258|Caenorhabditis elegans Hypothetical
           protein Y62E10A.8 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 276 DDFDEDSEQCLRGLKAPXXXSQXKCRAXTYLHXSKVXXLAXGKEXXXPFLIC 431
           DD DED E  L GLKA       K  A   +  +     +   +    +L+C
Sbjct: 99  DDEDEDFEMTLEGLKAKRLREMRKIAANRVIEMTDKKQYSDAVDGSSSYLLC 150


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +3

Query: 156 QCFVKISTTGSESRRTENMRLEAQGGVSMD*FPVELVGGADDFDEDSEQCLRGLKAPXXX 335
           Q  + +S    +S R E  + +    VS+D   +     AD  +ED    LR L AP   
Sbjct: 418 QMVMSVSREFQQSHREEASQAKTSELVSLDLQLLTYASKADQIEEDPRLMLRRL-APRKT 476

Query: 336 SQXKCRAXTYLH 371
           S  K ++ T L+
Sbjct: 477 SVDKWKSSTLLN 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,488
Number of Sequences: 27780
Number of extensions: 139107
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)