Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0032.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80444-10|AAB37792.2|  362|Caenorhabditis elegans Lethal protein...    29   4.2  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 53  TELKEKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNLN*ICSCNIDVYNLMK 214
           +EL EK   LT+QV  +Q A  N++   R+K  +++  L    + N+D+  L+K
Sbjct: 324 SELNEK---LTMQVKDLQDASENELASFRQKEKELIDELRMATNENVDLEELLK 374


>U80444-10|AAB37792.2|  362|Caenorhabditis elegans Lethal protein
           381 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 532 DXPXISPXNTMHPRXSPXIXPPA 600
           D P ISP  T+ P+ SP   PPA
Sbjct: 292 DFPGISPSPTVTPQVSPYFYPPA 314


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = +3

Query: 486  PAFPPSKSHFRLXPXRXTXHIPXXHHASPXFTXHXSPGXXTMCPTXSGXXP 638
            P+ PPS S F   P       P    +SP  T   SP      P  +   P
Sbjct: 1415 PSPPPSSSRFSTPPVSPVSSCPSSRFSSPSATRPQSPDPVPAAPAENCDLP 1465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,525
Number of Sequences: 27780
Number of extensions: 162189
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)