Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0004.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    81   1e-15

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 57/181 (31%), Positives = 79/181 (43%)
 Frame = +3

Query: 3   IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
           IASEVLK AG YDP R                 E  G D +   VPV+GGH+GITIIP+L
Sbjct: 154 IASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLL 213

Query: 183 XQCQPAXKXSDPAKIKAXTERIQELVPXXXXXXXXXXXXXXXHGVRRRAAHGLRAQGXKG 362
            Q +P+ K S+  +I   T RIQ+                    +          +G KG
Sbjct: 214 SQVKPSTKFSE-EEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANALVRGIKG 272

Query: 363 RVQXXXXXXXXXXXXXXXXXXAXPVVLGKNGLQKVLGYGTLQRIXXQQVLXAXLVQLXKN 542
             +                  + PV LG NG++K+LG G +     Q+++ A + +L KN
Sbjct: 273 E-KNVQCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVS-AYEQKLIDASVPELNKN 330

Query: 543 I 545
           I
Sbjct: 331 I 331



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +1

Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNV 375
           AGSATLSMA AGAR   +++RG+KGE NV
Sbjct: 248 AGSATLSMALAGARFANALVRGIKGEKNV 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,922
Number of Sequences: 27780
Number of extensions: 145761
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)