Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0075
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   159   2e-39
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    98   5e-21
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    75   3e-14

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score =  159 bits (385), Expect = 2e-39
 Identities = 76/91 (83%), Positives = 81/91 (89%)
 Frame = +3

Query: 258 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS 437
           LTLSEKILY HLD PK Q+IERG SYLRLRPDRVAMQDATAQMAMLQFISSGLP+ AVPS
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPKTAVPS 119

Query: 438 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF 530
           TIHCDHLIEAQ GG +DLARAKDL K+  +F
Sbjct: 120 TIHCDHLIEAQKGGAQDLARAKDLNKEVFNF 150



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = +2

Query: 509 NKEVYKFLETAGAKYXVGFWKPGSGIIHQI 598
           NKEV+ FL TAG+KY VGFWKPGSGIIHQI
Sbjct: 144 NKEVFNFLATAGSKYGVGFWKPGSGIIHQI 173



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
 Frame = +1

Query: 163 AQVAMSKFD-KVPLXYEKLTKNLEVVKKRLGR 255
           ++VA+SKF+ K  L YEKL++ +++VK RL R
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKR 58


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 46/56 (82%), Positives = 50/56 (89%)
 Frame = +3

Query: 363 MQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF 530
           MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDL K+  +F
Sbjct: 1   MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNF 56



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = +2

Query: 509 NKEVYKFLETAGAKYXVGFWKPGSGIIHQI 598
           NKEV+ FL TAG+KY VGFWKPGSGIIHQI
Sbjct: 50  NKEVFNFLATAGSKYGVGFWKPGSGIIHQI 79


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +3

Query: 258 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMA 389
           LTLSEKILY HLD PK Q+IERG SYLRLRPDRVAMQDA   MA
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDAVDVMA 103



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
 Frame = +1

Query: 163 AQVAMSKFD-KVPLXYEKLTKNLEVVKKRLGR 255
           ++VA+SKF+ K  L YEKL++ +++VK RL R
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,221
Number of Sequences: 27780
Number of extensions: 272123
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)