Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0073
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z92780-2|CAB07177.1|  115|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 32  YVYKVFILNTILLFFRTLSCKYL*LFRYFSLKMDMNNPPNQSYWFVLREDQSNVILSTNN 211
           +V  +F+L+T+     T S   + +F +  LK      P + +WF+L+   S  ILST N
Sbjct: 43  FVILLFVLSTVTATLLTASFLIMAVFLWNHLK------PMKFFWFLLQLTISAFILSTLN 96

Query: 212 FVNQNP 229
            V   P
Sbjct: 97  LVFNVP 102


>AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical
           protein F56A6.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +1

Query: 292 INEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLC----LEDRFKNINKXKTLWL 459
           + E  I   E+D   Q     T      DR +++LL K C     E+ F+  N  ++LW 
Sbjct: 3   VTECSICYDEYDHDTQIPCIGTCGHTICDRCRLQLLNKRCPHCKRENAFERKNVNRSLWD 62

Query: 460 TLHRCRY 480
            +   R+
Sbjct: 63  LIQLSRF 69


>Z92780-2|CAB07177.1|  115|Caenorhabditis elegans Hypothetical
           protein C45G3.4 protein.
          Length = 115

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 220 SKSPNSTSRDKIVVETGENR--QFIHINEPPIIVQEHDSQPQEKV 348
           S SP  TS + I+ ++   R  Q       PIIV+ +D  PQ K+
Sbjct: 64  SSSPRPTSSNSIIQKSDGKRKDQKNEKQASPIIVEVYDDTPQSKL 108


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 RYFSLKMDMNNPPNQSYWFVLREDQSN 190
           + FS+  +M+ PP   YW +  E +SN
Sbjct: 304 KQFSIPHNMDRPPAPRYWIIDNEVRSN 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,323,271
Number of Sequences: 27780
Number of extensions: 222553
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)