Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0056
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   124   5e-29
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    54   6e-08
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    47   7e-06
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    47   7e-06
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    30   0.81 
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    30   0.81 
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    30   0.81 
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   3.3  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine re...    27   5.7  
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    27   10.0 
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  124 bits (298), Expect = 5e-29
 Identities = 54/60 (90%), Positives = 59/60 (98%)
 Frame = +2

Query: 74  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           M DRKAVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
           G  FGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 59  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 23/60 (38%), Positives = 36/60 (60%)
 Frame = +2

Query: 74  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           M + K  +K  DM +  +   +    +A   +NI+KD+AAF+K+E DKK+  TWH I G+
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
           G  FGS V++E  HFI     +V ++++K G
Sbjct: 59  GKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 20/55 (36%), Positives = 36/55 (65%)
 Frame = +2

Query: 89  AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           A ++++ M   M+Q+A   A +++  +++E DIA  +K  FD++Y P WHCI G+
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGK 112



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKS 336
           G +FGS+VT E   FIYF +G +A +LFK+
Sbjct: 111 GKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 34/54 (62%)
 Frame = +2

Query: 92  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGR
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGR 104


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 34/54 (62%)
 Frame = +2

Query: 92  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGR
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGR 86


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 92  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 220
           +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 50  IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 270 HIRAKIRPTMQCQVGLYFLSN 208
           H  A + P+MQC +GLY++SN
Sbjct: 237 HKLATLFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 270 HIRAKIRPTMQCQVGLYFLSN 208
           H  A + P+MQC +GLY++SN
Sbjct: 237 HKLATLFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 402 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKIR-PTMQ 238
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I   TMQ
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPIDFKTMQ 697


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 205 FLDECSYVLFNVKFLERLSCTVNSILLHLFAH--VSILYDCFAITHLVLGLFLLR 47
           ++D C+  LFN+   +R++    +  + +F H  V ++Y  ++ + ++L   +LR
Sbjct: 520 WMDVCTLPLFNITLSQRIATFATAPFMSIFLHWMVGMVYVFYSASFVILLREILR 574


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 EEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 226
           EEM+  A DC     +KF+        +KK FD+K N
Sbjct: 60  EEMKLQAKDCTVPCFQKFSSITSRPNDLKKCFDEKDN 96


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 EEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 226
           EEM+  A DC     +KF+        +KK FD+K N
Sbjct: 60  EEMKLQAKDCTVPCFQKFSSITSRPNDLKKCFDEKDN 96


>AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein21 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -1

Query: 250 THDAMPGRIVFLVKFFLDECSYVLFNVKFLERLSCTVNSILLHLFAHV--SILYD--CFA 83
           +H  +   + F +  F  ECS V  +  F  R   ++ S   H F +    ++Y   CFA
Sbjct: 84  SHFGINSLVQFYILTFSIECSAVCISEMFYFRYKASLVSYKDHYFTYFLRFLVYSTRCFA 143

Query: 82  ITHLVLGLFLLR*MNKFSR 26
           I   +  +   +  NKF +
Sbjct: 144 IFDFIFPIVTYQDANKFQQ 162


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +1

Query: 271 THETRHFIYFYLGQVAILLFKSG*TI*HHFYFFVSSGRSIIRWIAFXDSHARLGLWYIPI 450
           T +   ++YFY+G V  LL     ++    Y  +SS      W     S A  GLW    
Sbjct: 315 TTDVHRYLYFYIGDVLDLLSLVNSSVNFVLYCVMSSRYRQTFWEVIIPSWA-CGLWTTRR 373

Query: 451 GS 456
           GS
Sbjct: 374 GS 375


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
            protein Y102A11A.3 protein.
          Length = 1571

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 366  KIEVMLNGLTALKEQY-SHLSQVEVDEVASLVCHIRAKIRPTMQCQV 229
            KI  M N L +L +   S   Q  V E + L+CH    +     C++
Sbjct: 1256 KISEMQNNLASLVDHLLSDQIQAAVQEASKLICHRMIPLARNQSCKI 1302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,175
Number of Sequences: 27780
Number of extensions: 225859
Number of successful extensions: 760
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)