Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0054
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    31   0.58 
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    30   1.0  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    30   1.0  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   3.1  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   3.1  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   7.1  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   9.4  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    27   9.4  
AC006708-5|AAF60428.2|  254|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = -2

Query: 327 LNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 148
           +++ +++I +  +S  +  S T+ A + L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 147 TARRAYSKARMACDTGGKASWLLKAW 70
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTA 352
           + +A   T SP PSD    S+DV+R L+F   R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTA 352
           + +A   T SP PSD    S+DV+R L+F   R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 322  VELRSASWHRGLQELWR 372
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 322  VELRSASWHRGLQELWR 372
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 257 FEVTLSPFPSDAPLTSMDVERALSFAPRRGTAVFKSYGGCSLSWFGCWEMSAT 415
           F V L  F    P  SM+ ++A   A  +  + F    G  ++WF CW ++ T
Sbjct: 188 FVVLLEEFEVPMPAFSME-KKAFYTAKMKIFSQFPYLLGIMIAWFVCWILTIT 239


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 247 CDGV*SHAVSVPERRSSDEYGRRARVELRSASWHRGLQELWRLFAVVV 390
           C G  S    + E+     Y  RA V+ +S +W    Q+L RLF   +
Sbjct: 232 CHGDYSFHNLLYEKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAM 279


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 469 NTENEKHRSNSELQY*AASRRHFPTSEPRQRTASIALEDRGATTRSEAQRALY 311
           N+ENEK R+  E +      R     E +QR  + A  +R      E + A Y
Sbjct: 155 NSENEKERNRREREEQQTKERERRLEEEKQRRDAEAEAERRRKEEEELEEANY 207


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 443  EQRVTILSGQSPTFPNIRTTTANSLHSS*RPRCHDAERSSTRALRPYSSEERRSGTET 270
            E+R  +L+GQSP F  +R           R R  +A++   +A+     E R+   +T
Sbjct: 1383 EERSGLLAGQSPDFSEVRAQIEEENRMKERSRKREAKK---KAVEKEKKEHRKEPKKT 1437


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 425 LSGQSP-TFPNIRTTTANSL-HSS*RPRCHDAERSSTRALRPYSSEERRSGTETA*LQT 255
           ++G SP TF   R  +   + H S RPR       ST+  R  SS   RS T T+ + T
Sbjct: 497 MAGDSPSTFMRHRPRSPTDVSHDSGRPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMST 555


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 227  RHTQMRTAMAFEVTLSPFPSDAPLTSMDVERALSFAPR 340
            RHT + +A A   + +P P+ AP     V RA S  P+
Sbjct: 1086 RHTPVGSAQAGSASSTPTPAAAPTNWGAVARAASVDPK 1123


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 425 LSGQSP-TFPNIRTTTANSL-HSS*RPRCHDAERSSTRALRPYSSEERRSGTETA*LQT 255
           ++G SP TF   R  +   + H S RPR       ST+  R  SS   RS T T+ + T
Sbjct: 497 MAGDSPSTFMRHRPRSPTDVSHDSGRPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMST 555


>AC006708-5|AAF60428.2|  254|Caenorhabditis elegans Hypothetical
           protein Y110A7A.11 protein.
          Length = 254

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 455 KTPFEQRVTILSGQSPTFPNIRTTTANSLHSS*RPRCHDAERSSTRALR 309
           K+  E+R+ ++      FP+++ T A+S + +     +D E+ S   LR
Sbjct: 76  KSSAEERLKVIEKIPRVFPDVQVTVADSKNDN-EAESYDFEKESAAGLR 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,337,719
Number of Sequences: 27780
Number of extensions: 178591
Number of successful extensions: 553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)