Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0045
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    31   0.47 
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    31   0.82 
U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine re...    28   5.8  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z38112-2|CAA86229.1|  126|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 51  RKRHLC*ENGTVNFENGPSIPFEDCWLRDHCRCSQCYHANTFQRAKHILELPD-SKI 218
           R ++ C E    N  N   +     WLRDHC   + YH  T QR  +  ++   SKI
Sbjct: 23  RSKNDCLEIRYENEGNPSKLIMPFVWLRDHCTSQKLYHLPTNQRKSNCCDITSLSKI 79



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +2

Query: 257 WDDKHTTEFKADFLSQFDYKTWKN--NRRLKPRLWRGCNVADRIAKVHVDEFLDSDDSSK 430
           W D H ++FK   + + + K  KN  N      LW   ++ D      V     S  S +
Sbjct: 98  WIDGHQSKFKIGNIIR-EGKVEKNVSNDNKIYELWNSKSLKD------VPRISKSTLSLQ 150

Query: 431 EVFQSLLDYGVAFITGVQPSAEATE-TCAKL*EEFNTLF 544
              ++L+ YGV  + GV+ ++EATE  C  L    +T F
Sbjct: 151 SFSKNLVKYGVIIVDGVEGTSEATEKLCQSLVPVHDTFF 189


>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 481 ATKRGSYRNMCKALGGIQHTIFGATWEFTTVA 576
           +TKRG Y +  KAL G++  +F   + F T+A
Sbjct: 241 STKRGDYSSTSKALTGVKRKLFAGFFVFATMA 272


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 7   MEFSVGF-NENSAKKIENVIFVERTV 81
           +EFSV F  +NS KK+E +IF E+ V
Sbjct: 29  LEFSVNFPRKNSKKKLETIIFYEKNV 54


>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/72 (30%), Positives = 42/72 (58%)
 Frame = -1

Query: 448 KRLKYFL*TVVRVKKLINVYFSYSISNVTAAPQSRLQSAIVFPSFIIELRQKVRFEFCSV 269
           +RLKY    +V ++KLIN++FS       A+ + R+ + + F   + E R +  F   SV
Sbjct: 34  RRLKY---VIVLIRKLINLHFS-------ASSRDRISNPVFFD--VSESRMRRWF---SV 78

Query: 268 LIVPLIVRLFLS 233
           +++P +V++ L+
Sbjct: 79  ILLPFLVKIILA 90


>U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical
           protein C05D11.5 protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 159 YHANTFQRAKHILELPDSKILTLQFDK-NSLTINGTISTLQNSKRTF 296
           YH N ++ A  ++++  S  L +Q+D  ++  ING I  +    + +
Sbjct: 156 YHLNNYEDAMDVIQMDQSNNLKIQYDTFHAQQINGQIGAIMRKLKDY 202


>Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical
           protein F53F4.7 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 429 RKYFNRFLTM-ALPL*LVCNQARKLQKHVQSFRRNSTHYFWCYV 557
           R +F  F+   A+PL L+ N   +  K+++  R+N   + W ++
Sbjct: 2   RPFFIAFILFSAIPLSLIFNNIYQNYKNLKVLRKNEAEFHWSHI 45


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 101 PFDSL*RLLAQRPLQMFTMLSREYVPES*THFRTA 205
           P  SL R    R  ++F ++SR+Y  +  T+F++A
Sbjct: 104 PLLSLIRFFVVRDFEVFVVISRKYAKQDATNFKSA 138


>AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein8 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 75  SLNKDDVFYFFRTVFI 28
           +LN+ DVF F+RT+FI
Sbjct: 112 TLNRQDVFTFYRTIFI 127


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 105 KGHSRSSQYRSLNKDDVFYFFRTVFIES 22
           K  SR SQ+R   +++V  FF+TVF +S
Sbjct: 213 KRTSRESQHRRKARENVAQFFQTVFQDS 240


>Z38112-2|CAA86229.1|  126|Caenorhabditis elegans Hypothetical
           protein E03A3.4 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +2

Query: 2   KRWNSVSDSMKTVRKK*KTSSLLRERYCELREWPFDSL*RLLAQR--PLQMFTMLSREYV 175
           KR+   S+++K +RK  K++ LL      +R+ PF  L R +AQ   P   F   + + +
Sbjct: 38  KRYRPSSNALKEIRKYQKSTELL------VRKLPFQRLVREVAQEIMPNVRFQSAAIQAL 91

Query: 176 PES*THFRTARFEDT 220
            E+   +    FEDT
Sbjct: 92  HEAAEAYLIGLFEDT 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,175
Number of Sequences: 27780
Number of extensions: 262370
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)