Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30122.Seq
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 91 7e-19
AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical... 31 0.74
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.0
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.0
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.0
Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 27 9.1
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 27 9.1
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 91.1 bits (216), Expect = 7e-19
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +1
Query: 361 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*VDN 540
RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+ N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161
Query: 541 VYQSLPTALLRRGFHKHNIICVEDL 615
++ + K NIIC+EDL
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDL 186
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVK 367
G++YVP E K+AFV+RIRGINQ+ PK K
Sbjct: 75 GDFYVPAEHKVAFVVRIRGINQLHPKPRK 103
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 69 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
+KK+P VPE+VLK Q + + +KK + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
>AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical
protein Y47D3A.30 protein.
Length = 565
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 477 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 349
++PS RL H H+ L Q +++ I Q K++Q F GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 289 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 423
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 289 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 423
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 289 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 423
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical
protein T08G3.8 protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -3
Query: 229 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 50
YS+ L+K+S +FL + + +S + ++ R ++++ ++ FL+ PLT
Sbjct: 24 YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82
Query: 49 G 47
G
Sbjct: 83 G 83
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 171 SAIKKKREIFKRAEQYVKEYRIKERDEID 257
S+I++K E ++ +Q KEYR+K E++
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQELN 93
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 171 SAIKKKREIFKRAEQYVKEYRIKERDEID 257
S+I++K E ++ +Q KEYR+K E++
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQELN 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,827
Number of Sequences: 27780
Number of extensions: 288178
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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