Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0065.Seq
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    73   1e-13
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   4.7  
U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical p...    27   8.2  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   8.2  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   8.2  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   8.2  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   8.2  

>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 40/103 (38%), Positives = 54/103 (52%)
 Frame = +3

Query: 78  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
           MSI++Y GG VVAM G +CV IA+D R G Q  T++T   K            +  +   
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60

Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
           +TV +   FR NLY L+E    + +  S M+S L Y  RFG Y
Sbjct: 61  RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSY 103



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 28/74 (37%), Positives = 34/74 (45%)
 Frame = +2

Query: 347 VVNLIV*PTFRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGM 526
           + NL     F     EP++AGLD      PY      IGC + P DFV +G   E L G+
Sbjct: 91  ISNLAYQHRFGSYFTEPLVAGLDDTN--KPYICCMDTIGCVSAPRDFVAVGTGQEYLLGV 148

Query: 527 CXALWGXPTXKPDE 568
           C   W     KPDE
Sbjct: 149 CENFW-RENMKPDE 161


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 15  FELITLQ*FQVKKCLSFYITNMSILAYNGGAVVAMKG 125
           F LITL  FQ+  C ++Y        Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167


>U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical
           protein C50E3.15 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -1

Query: 227 YXVGPXWNTF---GKLG*YCLSLYTKPLVRSDGH 135
           Y  G  WNT    G  G YCL +Y  P   SD H
Sbjct: 280 YKSGYKWNTGEPNGLGGEYCLQMYILPDTSSDSH 313


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -1

Query: 548 GXPRXLXTYHTAFRTGARYPQNL-QGHLGNQSSHXTDHKGWV 426
           G P     +H  F      P  L Q H   Q SH   H+G V
Sbjct: 404 GFPTPYPDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQV 445


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -1

Query: 548 GXPRXLXTYHTAFRTGARYPQNL-QGHLGNQSSHXTDHKGWV 426
           G P     +H  F      P  L Q H   Q SH   H+G V
Sbjct: 500 GFPTPYPDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQV 541


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -1

Query: 548 GXPRXLXTYHTAFRTGARYPQNL-QGHLGNQSSHXTDHKGWV 426
           G P     +H  F      P  L Q H   Q SH   H+G V
Sbjct: 472 GFPTPYPDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQV 513


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -1

Query: 548 GXPRXLXTYHTAFRTGARYPQNL-QGHLGNQSSHXTDHKGWV 426
           G P     +H  F      P  L Q H   Q SH   H+G V
Sbjct: 404 GFPTPYPDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQV 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,013
Number of Sequences: 27780
Number of extensions: 247591
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)