Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0057.Seq
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   167   5e-42
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  167 bits (406), Expect = 5e-42
 Identities = 73/85 (85%), Positives = 81/85 (95%)
 Frame = -1

Query: 508 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 329
           +EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKN
Sbjct: 18  QEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKN 77

Query: 328 GKKVTAFVPRDGCLNHIEENDEVLV 254
           GKK+TAFVP DGCLN +EENDEVLV
Sbjct: 78  GKKITAFVPNDGCLNFVEENDEVLV 102



 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 34/41 (82%), Positives = 38/41 (92%)
 Frame = -3

Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
           +GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 103 SGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 558 MGKPRGIRTARKHVNHRVNSDGRTKNSRK 472
           MGKP+G+ TARK   HR       K  +K
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKK 29


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = -1

Query: 433 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 253 R 251
           +
Sbjct: 129 K 129


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 576 WCRAIQMGKPRGIRTARKHVNHRV 505
           WC +IQ+    G +  RKH+ HRV
Sbjct: 464 WCPSIQLLTYYGSQDERKHLRHRV 487


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 576 WCRAIQMGKPRGIRTARKHVNHRV 505
           WC +IQ+    G +  RKH+ HRV
Sbjct: 464 WCPSIQLLTYYGSQDERKHLRHRV 487


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 316 TAFVPRDGCLNHIEEN 269
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,342
Number of Sequences: 27780
Number of extensions: 313394
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)