Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    32   0.62 
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    32   0.62 
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      28   7.6  

>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 250 QREVSMDTLAANFLKFSGSFSDHRMVMFGSGDGPMVYRVFRKRKLFLVTRVRPSRPIPPI 429
           QR+  M+ +  + LK   +F D    +FG G   ++    +K  + + +   PSR   P 
Sbjct: 643 QRKTGMEPMFPSLLKRKNAFDDDEAPVFGGGSAAVINNTEKKIVIKVNSDRSPSRTPSPA 702

Query: 430 DSVAQIGSP 456
            S     SP
Sbjct: 703 SSPRASSSP 711


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
            (dictyostelium suppressorof mek null) homolog protein 1,
            isoform a protein.
          Length = 1085

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 250  QREVSMDTLAANFLKFSGSFSDHRMVMFGSGDGPMVYRVFRKRKLFLVTRVRPSRPIPPI 429
            QR+  M+ +  + LK   +F D    +FG G   ++    +K  + + +   PSR   P 
Sbjct: 879  QRKTGMEPMFPSLLKRKNAFDDDEAPVFGGGSAAVINNTEKKIVIKVNSDRSPSRTPSPA 938

Query: 430  DSVAQIGSP 456
             S     SP
Sbjct: 939  SSPRASSSP 947


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 373 KRKLFLVTRVRPSRPIP-PIDSVAQIGSPENSSSYSGVRRKRTIRSS*PGGQP 528
           K++  L   + P    P P DSV+Q  S + ++S S  RRK +++S  P   P
Sbjct: 70  KKRSLLSGAMTPRSSSPAPSDSVSQTNSLKRNNSSSQGRRKDSVQSQTPARSP 122


>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 473 YDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYT 354
           YD   S +PI   E  GGMG + R L   N  R ++T +T
Sbjct: 198 YDPRASMEPIQTLEGHGGMGREARVLFAGN--RLISTGFT 235


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 473 YDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYT 354
           YD   S +PI   E  GGMG + R L   N  R ++T +T
Sbjct: 198 YDPRASMEPIQTLEGHGGMGREARVLFAGN--RLISTGFT 235


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 473 YDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYT 354
           YD   S +PI   E  GGMG + R L   N  R ++T +T
Sbjct: 198 YDPRASMEPIQTLEGHGGMGREARVLFAGN--RLISTGFT 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,500,648
Number of Sequences: 27780
Number of extensions: 460721
Number of successful extensions: 1265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)