Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0029.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-14|AAB09153.1|   81|Caenorhabditis elegans Nematode speci...    31   1.1  
AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin (cae...    28   6.1  

>U70854-14|AAB09153.1|   81|Caenorhabditis elegans Nematode specific
           peptide family,group b protein 5 protein.
          Length = 81

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 373 LASPLVTAPYGIAA-PYGIAAPYTAYGAYGVAPYGLGVHAW 492
           L +P+V++PY  A+ P   A PY AY AYG A Y    + W
Sbjct: 22  LYTPVVSSPYYYASSPVASAYPY-AY-AYGAAAYPTAYYGW 60


>AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 2 protein.
          Length = 72

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 391 TAPYGIAAPYGIAAPYTAY----GAYGVAPYGLG 480
           TA YG     G+   Y  Y    G YG+ PYG+G
Sbjct: 17  TAQYGYGGYPGMMGGYGGYPGMMGGYGMRPYGMG 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,963,572
Number of Sequences: 27780
Number of extensions: 126167
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)