Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    87   8e-18
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    87   8e-18
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +1

Query: 217 VEEIRRNSA*RKS--LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASE 390
           VEE+R+    +    L  +NG I+DVTRGK FYGPG  Y   AG DATR L T    A  
Sbjct: 52  VEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQNA-V 110

Query: 391 NDEYDDVSDLGSDEIASAIEWEEQFRGKYGIVGRLLK 501
           + E+DD + + +DE  +A EWE QF+ KY  VGRL+K
Sbjct: 111 SSEWDDHTGISADEQETANEWETQFKFKYLTVGRLVK 147


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +1

Query: 217 VEEIRRNSA*RKS--LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASE 390
           VEE+R+    +    L  +NG I+DVTRGK FYGPG  Y   AG DATR L T    A  
Sbjct: 67  VEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQNA-V 125

Query: 391 NDEYDDVSDLGSDEIASAIEWEEQFRGKYGIVGRLLK 501
           + E+DD + + +DE  +A EWE QF+ KY  VGRL+K
Sbjct: 126 SSEWDDHTGISADEQETANEWETQFKFKYLTVGRLVK 162



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 44  TNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELK 223
           T  L+ W E T    + L+ V+ +  Y + +S     A              D+TV EL+
Sbjct: 15  TMDLSSWFEFTMYDAVFLVVVLGFFFYWLTRSEQPLPAPPKELAPLPMS---DMTVEELR 71

Query: 224 KYDGTQPDGRVF 259
           KYDG + +  +F
Sbjct: 72  KYDGVKNEHILF 83


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/77 (36%), Positives = 40/77 (51%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIA 438
           LA+ G +++V   K +YGPG  Y  FAG+DATR   TG     E+        L  DE+ 
Sbjct: 120 LAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF--QESGLIATTHGLSHDELL 177

Query: 439 SAIEWEEQFRGKYGIVG 489
           S  +W   +  +Y +VG
Sbjct: 178 SIRDWVSFYDKEYPLVG 194


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 283 DVTRGKRFYGPGGPYSA--FAGKDATRGLATGQVAASENDEYDDVSDLG 423
           D  R KR Y P GPY +        T   AT   AA +   YD V+D G
Sbjct: 72  DNDREKRSYEPEGPYQSETTTPSTTTSTAATTTEAAEDESGYDFVNDNG 120


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 597 LTHWSNVNPTNWLTEIFGLRSHHHCNFLAFTQFEE 493
           LTHW  V+P +   E     + H  N+ AFT+FE+
Sbjct: 185 LTHWDIVHPDSDPEETELSMAPHRRNWKAFTEFED 219


>Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical
           protein F57B1.7 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 467 LNCSSHSMAEAISSEPRSLTSSYSSFSDAATCPVAKPLVASLP 339
           LN  +  +  +I++ P+ L SS +S SDA++C  + P   S+P
Sbjct: 36  LNALNSLLYGSINTSPQPLLSSPTS-SDASSCSPSMPFTPSIP 77


>AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical
           protein Y73E7A.2 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 358 GLATGQVAASENDEYDDVSDLGSD-EIASAIE-WEEQFRGKYGIVGRLLKLGERQKITVM 531
           G   G+ A  + ++ DDV ++ SD EI S  E  EE+   +  I G+  K+G     +  
Sbjct: 218 GEGKGKAAGEDEEDDDDVEEIPSDEEILSDFEDDEEEPAEELEIPGKSRKIGGG---STS 274

Query: 532 MRAKTKNLSK 561
           +++  KNL K
Sbjct: 275 VKSLAKNLQK 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,281
Number of Sequences: 27780
Number of extensions: 264607
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)