Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0022
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    33   0.14 
AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic ...    28   5.3  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    28   5.3  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    28   5.3  
Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
 Frame = +2

Query: 227 RNLFFTYFFFLEHC----HFV-SLLFFR*LHFAFI*SYVMFFFLTNMLRCLRLINTTSYR 391
           R +FF +F     C    +F+ +LLF   L FAF   +++ FF+T+  +C  LINTT ++
Sbjct: 45  RKIFFLHFHGNLKCLLIVYFICNLLFSMALCFAFFYQFLIPFFVTS--KCQLLINTTLFK 102

Query: 392 DGI*C 406
            G  C
Sbjct: 103 WGQIC 107


>AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical
           protein F36H9.5 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
 Frame = +2

Query: 179 FNAPSDKICNVPNVFERNLFFTYFFFLEHCHFVSLLFFR*LHF--AFI*SY------VMF 334
           F  P D + ++ N+ E N++    F L  C  +++ FF+ + F    I  +       MF
Sbjct: 113 FTYPKDGLLSILNLLELNVWGNVIFRLATCLTIAVRFFQSIVFRNLLINGFWREVPNPMF 172

Query: 335 FFLTNMLRCLRLINTTS 385
            +L ++L  L LI TT+
Sbjct: 173 RWLCDLLPMLTLIETTA 189


>AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform c protein.
          Length = 906

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 195 IRFVMCQTCLKGICFLPIFSF*STAILFRFYSLGSCISLLFR-AM*CFF 338
           I F M  TC+  + F PI+    +    +  SL  CISL    A+ CFF
Sbjct: 804 IGFTMYSTCILWLAFGPIYFATQSDFRIQITSLCMCISLSGTVALICFF 852


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 195 IRFVMCQTCLKGICFLPIFSF*STAILFRFYSLGSCISLLFR-AM*CFF 338
           I F M  TC+  + F PI+    +    +  SL  CISL    A+ CFF
Sbjct: 804 IGFTMYSTCILWLAFGPIYFATQSDFRIQITSLCMCISLSGTVALICFF 852


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 195 IRFVMCQTCLKGICFLPIFSF*STAILFRFYSLGSCISLLFR-AM*CFF 338
           I F M  TC+  + F PI+    +    +  SL  CISL    A+ CFF
Sbjct: 804 IGFTMYSTCILWLAFGPIYFATQSDFRIQITSLCMCISLSGTVALICFF 852


>Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical
           protein T07G12.10 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 455 LYTSRTREGKKQNEIENIKCHRDN 384
           L  S  ++ ++ N++ NIKCH DN
Sbjct: 455 LVQSPNKQKEEMNKVHNIKCHFDN 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,604
Number of Sequences: 27780
Number of extensions: 201049
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)