Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0020
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   116   1e-26
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   112   2e-25
U50312-10|AAY86208.1|  356|Caenorhabditis elegans Hypothetical p...    29   3.4  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   3.4  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    27   7.8  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +2

Query: 305 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 484
           L AYA+KK+KK   IAKSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GY
Sbjct: 110 LAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 169

Query: 485 GINKLQIMVLSRTTKFSVDLLTRK 556
           GI KLQI+ +    K SVD L  K
Sbjct: 170 GIKKLQIITVIEDLKVSVDDLIEK 193



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9   EKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTWSQ--GTSP 176
           E+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +ASYT AERKTW+   G++P
Sbjct: 20  EQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVASYTDAERKTWASAGGSAP 78


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  112 bits (269), Expect = 2e-25
 Identities = 52/84 (61%), Positives = 64/84 (76%)
 Frame = +2

Query: 305 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 484
           L AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GY
Sbjct: 160 LAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 219

Query: 485 GINKLQIMVLSRTTKFSVDLLTRK 556
           GI KLQI+ +    K SVD L  K
Sbjct: 220 GIKKLQIITVIEDLKVSVDDLIEK 243


>U50312-10|AAY86208.1|  356|Caenorhabditis elegans Hypothetical
           protein B0222.11 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 451 LGSLQTCA-CWVWHK*TANYGVIEDDKVFC*FAD 549
           LG++  C+ CWVW +  + Y     ++V C +AD
Sbjct: 241 LGTVSLCSTCWVWRRLPSTYYPAYLNEVVCDYAD 274


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 359 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 484
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSY 471


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 99   HVLRWYNQIASYTPAERKTWSQGTSP 176
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 QPECMKQFDYTIVVRGEG*RPAPCXLAQILEHQLEKECIQTR 19
           QP CM   + + VV+     PAP       + Q +++C+QT+
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQ 167


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 99   HVLRWYNQIASYTPAERKTWSQGTSP 176
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,652,494
Number of Sequences: 27780
Number of extensions: 252265
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)