Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0062.Seq
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    29   4.6  
Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical p...    28   6.0  
AC006720-6|AAF60450.1|  346|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 63  KFLNVIFFLLLYVVLGIFVWRTVLINFVSLIYYF 164
           K L +I   ++Y++  IF + T L++F   I YF
Sbjct: 88  KLLPLILMYIIYIITQIFSFLTFLLSFQRFILYF 121


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 261 LMTLKCRYKIELIMRLNYINAQTLDASPKFP 353
           +++ KC  K EL++R N+   + LD+  KFP
Sbjct: 64  ILSKKCSKKEELLLRDNFYALEQLDSFGKFP 94


>Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical
           protein F14F8.10 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 196 SSFFLKCYYNSK*YIKDTKFIRTVRQTKIPSTTYNNK 86
           +S FL CY+ S  Y + T+ + + R+  IP+ T +++
Sbjct: 336 TSHFLMCYFFSSQYKRATRELFSCRKNAIPAVTRSSR 372


>AC006720-6|AAF60450.1|  346|Caenorhabditis elegans Hypothetical
           protein Y17G9B.9 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 288 IELIMRLNYINAQTLDASPKFPQAAEQNTIVQKQ--PYLIYIETI*NRNQKFHLYD 449
           +EL+   NY +   +D +PK        TI++ +    L +I+T+   N +   YD
Sbjct: 56  VELVEDENYCSVHRIDETPKLVDKKPSKTIIRDEAVKVLRHIQTVPIENLRLKRYD 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,995
Number of Sequences: 27780
Number of extensions: 275631
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)