Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0056.Seq
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domai...    29   4.0  
U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domai...    29   4.0  
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    28   5.3  
Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform b protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 605 ILPFHNNQVPEFFFLSYNVLH 667
           +L  HNN  P F FLSY  +H
Sbjct: 179 VLDNHNNSKPFFMFLSYQAVH 199


>U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform a protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 605 ILPFHNNQVPEFFFLSYNVLH 667
           +L  HNN  P F FLSY  +H
Sbjct: 215 VLDNHNNSKPFFMFLSYQAVH 235


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 560 ILVMSVMPEHKINYFILPFHNNQVPEFFFLSYNVL 664
           I     +PEH I+YFI+ F N +  E   ++ N L
Sbjct: 600 IRAWQALPEHGIHYFIVRFRNARKAELVAVAVNRL 634


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 560 ILVMSVMPEHKINYFILPFHNNQVPEFFFLSYNVL 664
           I     +PEH I+YFI+ F N +  E   ++ N L
Sbjct: 600 IRAWQALPEHGIHYFIVRFRNARKAELVAVAVNRL 634


>Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical
           protein F55A11.1 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 59  NLKSHSDGSLNQTNNFTPQQL 121
           ++K H DG ++ T N TP+QL
Sbjct: 60  HIKEHLDGKVDPTANMTPEQL 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,440
Number of Sequences: 27780
Number of extensions: 228959
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)