SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0055.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    58   6e-09
AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    48   5e-06
U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical pr...    39   0.003
AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    38   0.005
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    38   0.009
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    36   0.028
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    36   0.028
U67953-1|AAQ91892.1|  398|Caenorhabditis elegans Hypothetical pr...    36   0.028
U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical pr...    36   0.037
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    35   0.049
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    35   0.064
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    34   0.085
AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical ...    33   0.20 
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    33   0.26 
AF067623-4|AAC17556.2|  393|Caenorhabditis elegans Hypothetical ...    33   0.26 
U97193-14|AAB52442.2|  381|Caenorhabditis elegans Ring finger pr...    32   0.34 
Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical pr...    31   0.79 
L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        31   0.79 
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    31   0.79 
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    31   0.79 
Z78413-3|CAB01659.1|  202|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    30   1.4  
U23511-12|AAC46798.2|  610|Caenorhabditis elegans Hypothetical p...    30   1.4  
U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z70208-5|CAA94134.1|  201|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    29   4.2  
Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF098987-7|AAC67430.1|  310|Caenorhabditis elegans Forkhead tran...    28   5.6  
Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    28   7.4  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    28   7.4  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016665-9|AAC71177.1|  363|Caenorhabditis elegans Nuclear hormo...    28   7.4  
Z72509-6|CAA96650.1|  223|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U21310-4|AAA62518.1|  165|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL021487-5|CAA16350.1|  244|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL021487-4|CAA16351.1|  244|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical...    27   9.8  
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = +2

Query: 341 AANVDGVEGFQWYYEGRN-GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ 511
           A+  D  E   W Y G+N GWW+++ R+  E+E A+N G+  C +++ G  Y++DF Q
Sbjct: 102 ASICDPEERKYWIYSGKNQGWWRFEPRNEREIEEAYNAGKCHCEVVICGRPYVIDFHQ 159



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 147 NMEYDCAVCLQKCQHPTKL-SCGHVFCFLCVKGV 245
           N++ +C +C  K   PT + +CGH FCF+C+KGV
Sbjct: 7   NIDAECPICQCKMIVPTTIPACGHKFCFICLKGV 40


>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 374 WYYEGRN-GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ 511
           W Y GR+ GWW++D R   E+E AF +      + + G  YIVDF Q
Sbjct: 132 WLYRGRHQGWWRFDPRIEKEIEEAFTHQMPMTEVTICGNPYIVDFSQ 178



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +3

Query: 150 MEYDCAVCLQKCQHPTKL-SCGHVFCFLCVKGVA 248
           ++ +CAVC  +   PT + SCGH FCF+C+KGV+
Sbjct: 20  IDKECAVCYSEMILPTTIPSCGHKFCFICLKGVS 53


>U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical
           protein C02B8.6 protein.
          Length = 347

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 329 NLQYAANVDGVEGFQWYYEGR-NGWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDF 505
           N+Q   NV  V+ F W Y  R +GWW++D+R   ++E+ F   +    + L G  YI+DF
Sbjct: 244 NVQANFNVARVKFF-WLYSSRGDGWWRFDQRCEKDIEDEFLANKPNMEMYLFGKPYILDF 302



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKG 242
           C +C      P +L C H FC++C+KG
Sbjct: 5   CTICHNTPNRPVRLDCNHEFCYICIKG 31


>Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical
           protein F08G12.5 protein.
          Length = 185

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 162 CAVCLQKCQH-PTKLSCGHVFCFLCVKGVAH 251
           CAVCL   Q  P  L+CGH FC  C++ VAH
Sbjct: 40  CAVCLNIFQGIPQTLTCGHSFCHRCIEEVAH 70


>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 144 HNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
           H   ++C +CL     P    CGH+FC  C+
Sbjct: 99  HQSSHECPICLANASFPVLTDCGHIFCCECI 129


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = +3

Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
           + C++CL+  ++P+ L CGH+FC+ C++
Sbjct: 253 FQCSICLEN-KNPSALFCGHLFCWTCIQ 279


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQA-ENVQC 272
           C +CL + + P  L C H FC+ C++  A     N++C
Sbjct: 43  CPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKC 80


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQA-ENVQC 272
           C +CL + + P  L C H FC+ C++  A     N++C
Sbjct: 43  CPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKC 80


>U67953-1|AAQ91892.1|  398|Caenorhabditis elegans Hypothetical
           protein ZC13.1b protein.
          Length = 398

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
           E  CAVC      P KL C HVFC  C++
Sbjct: 334 EQPCAVCHGDLLQPIKLECTHVFCKFCIE 362


>U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical
           protein C26B9.6 protein.
          Length = 306

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKL-SCGHVFCFLCVK 239
           C +C  K   PT++ +CGH FC++C+K
Sbjct: 107 CYICYYKLTIPTRIENCGHEFCYVCLK 133



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
 Frame = +2

Query: 368 FQWYYEGRN---GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ*L------N 520
           + W Y   N     +++ +     +EN++   +  C + + G  + +DF++ L      N
Sbjct: 10  YLWIYNDGNCKSNMYEFHKDLQEHIENSYKRKKKTCKVSIFGVTHTIDFEKMLKYRNRPN 69

Query: 521 SVEVIILAAAGAKEYPPVTC 580
           + EV  +  + AK+Y  + C
Sbjct: 70  TSEVKRITRSQAKQYGVLGC 89


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
           E  C +C    + P   +C H+FC  C+     +   VQC
Sbjct: 18  ELKCGICCSTYKDPILSTCFHIFCRSCINACFERKRKVQC 57


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
           ++ CAVCL     P  + CGH +C  C++  +H   N +C
Sbjct: 5   DFCCAVCLDFFVEPCIIECGHSYCRFCIE--SHLNINEKC 42


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
           protein F40G9.12 protein.
          Length = 230

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 159 DCAVCLQKCQ----H-PTKLSCGHVFCFLCVKGVAHQAENVQCVAQKF 287
           +C +C +  +    H P  LSCGH +C +C++ +A    NV  +   F
Sbjct: 18  ECKICYKNYETSGDHCPRVLSCGHTYCEICIQELASLRNNVHWILTSF 65


>AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical
           protein T08D2.4 protein.
          Length = 95

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +3

Query: 147 NMEYDCAVCLQKCQ---H-PTKLSCGHVFCFLCVK 239
           NM+  C++C+++     H P  L CGH FC +C++
Sbjct: 21  NMKPTCSICMEEFDANSHIPKVLICGHSFCIICIE 55


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQ 254
           E  C +C++  + P  L+CGH  C +C    AHQ
Sbjct: 4   ELKCTICIRFFEDPIILTCGHSLCRMCAL-KAHQ 36


>AF067623-4|AAC17556.2|  393|Caenorhabditis elegans Hypothetical
           protein T26C12.3 protein.
          Length = 393

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLC 233
           C  CLQ  + P  L CGH  C +C
Sbjct: 110 CPHCLQIFEQPISLQCGHSLCLIC 133


>U97193-14|AAB52442.2|  381|Caenorhabditis elegans Ring finger
           protein protein 1 protein.
          Length = 381

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLS----CGHVFCFLCVKGV 245
           C VC Q     TKL+    CGH FC  C++ V
Sbjct: 22  CQVCYQPFNETTKLARSLHCGHTFCTECIRNV 53


>Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical
           protein C16C10.7 protein.
          Length = 235

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
           ++C +CL   +      CGH+FC+ C+
Sbjct: 24  FECNICLDAAKDAVVSLCGHLFCWPCL 50


>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQK 284
           C +C Q    P  ++CGH +C  C++   H  +   CV  K
Sbjct: 56  CPLCDQLFDRPVMVTCGHSYCEPCIE--RHTRDTRACVICK 94


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQK 284
           C +C Q    P  ++CGH +C  C++   H  +   CV  K
Sbjct: 56  CPLCDQLFDRPVMVTCGHSYCEPCIE--RHTRDTRACVICK 94


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 159 DCAVCLQKCQ-----HPTKLSCGHVFCFLCVKGVAHQAENVQC 272
           +C +C +K +      P   +CGH +C  C++   HQ + ++C
Sbjct: 137 ECKICFEKYEVTGNRSPRVFNCGHTYCESCIQVCKHQFQ-IKC 178


>Z78413-3|CAB01659.1|  202|Caenorhabditis elegans Hypothetical
           protein T01C3.3 protein.
          Length = 202

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 159 DCAVCLQKCQHPTKL----SCGHVFCFLCVKGVAHQA 257
           +C VC QK    T++     CGH  C  C+  +   A
Sbjct: 132 ECLVCYQKFDENTRIPRVMDCGHTLCDFCINQIVKMA 168


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 320 PIEQGFQSSLKEFLCDTLHIFCLMSYTLHTKKTE 219
           P   G +S+  EF C T       SYT+H KK+E
Sbjct: 29  PESPGSRSNYGEFYCPTTDSLKTYSYTIHMKKSE 62


>U23511-12|AAC46798.2|  610|Caenorhabditis elegans Hypothetical
           protein C32D5.10 protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 153 EYDCAVCLQKCQHPTKLS-CGHVFCFLCVKG 242
           E +C+VC  +    T LS C H FC+ C+ G
Sbjct: 38  EEECSVCKNEIIDTTSLSDCCHEFCYDCIVG 68


>U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical
           protein C06A5.8a protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLS----CGHVFCFLCVK 239
           C VC       TKL+    CGH FC  C+K
Sbjct: 38  CQVCCTNYNETTKLARGLHCGHTFCTECIK 67


>Z70208-5|CAA94134.1|  201|Caenorhabditis elegans Hypothetical
           protein F54B11.5 protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 129 VLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
           +L  + ++E +C +C++   +   L C H FC  C+        +  C
Sbjct: 118 ILTQTSDVEGNCVICMENI-NDLLLPCLHAFCIRCIANEMEYRHDFSC 164


>Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical
           protein F47G9.4 protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKG 242
           C +C  + + P  LSC H  C  C  G
Sbjct: 8   CTICKNEFEEPILLSCQHTTCRKCSTG 34


>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 698 GYYNFSFCIIMIF---VDIIFSFIFYFNWHLINIGSYTGYS 585
           GY+  S C++ I    V  +FS IF F  + IN+ S  G++
Sbjct: 21  GYFARSCCVVFILIICVIFVFSVIFTFMQNPINLNSDNGFN 61


>AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.11 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 141 SHNMEYDCAVCLQKCQHPTKLS---CGHVFCFLCV 236
           SH+ +  C +CL++ +  T+L    CGH F   CV
Sbjct: 310 SHSAQERCVICLEEYEEGTELRVLFCGHEFHPKCV 344


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = +3

Query: 159 DCAVCL---QKCQHPTKL--SCGHVFCFLCV 236
           +C++C       QH  KL  +CGH FC+ C+
Sbjct: 33  ECSICFFDFDDFQHLPKLLENCGHTFCYSCL 63


>Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical
           protein F08B12.2 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 162 CAVCLQKCQHPTKLSC-GHVFCFLCV 236
           C +CL+K  + T L   G+VFC+ C+
Sbjct: 307 CPICLKKRVNDTALFVSGYVFCYTCI 332


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 198 KLSCGHVFCFLCVKG 242
           KLSCGHVF   C++G
Sbjct: 330 KLSCGHVFHEFCIRG 344


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +3

Query: 162 CAVCLQK---CQHPTKLSCGHVFCFLCV-KGVAHQAENVQCVAQK 284
           C  C++K   C H     C H FC++C     +H +E  +C   K
Sbjct: 290 CHSCIEKAGGCNHIQCTRCRHHFCWMCFGDWKSHGSEYYECSRYK 334


>AF098987-7|AAC67430.1|  310|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 8 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 368 FQWYYEGRNGWWKYDERSNSELENAFNNGE 457
           FQ+Y E RN  WK   R N  L   F+  E
Sbjct: 90  FQFYRENRNSSWKNSIRHNLSLNKQFSRIE 119


>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
 Frame = +3

Query: 162 CAVCLQKCQHPTK----LSCGHVFCFLCVKGVAHQAEN 263
           C VC  +    +     L CGH FC  CV G +    N
Sbjct: 63  CRVCYDEYHSSSNQARVLQCGHTFCTRCVVGCSSTMNN 100


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 570 GGYSFAPAAASMITSTELSHCWKSTMYKVPASSKVHSDSPL 448
           G  S   +  + ITST ++  W ++   +P +  + S+SPL
Sbjct: 45  GSVSLPSSTTATITSTTVTPVWVASKNSIPFADTLGSNSPL 85


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 570 GGYSFAPAAASMITSTELSHCWKSTMYKVPASSKVHSDSPL 448
           G  S   +  + ITST ++  W ++   +P +  + S+SPL
Sbjct: 17  GSVSLPSSTTATITSTTVTPVWVASKNSIPFADTLGSNSPL 57


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +3

Query: 162 CAVCLQK-----CQH-PTKLSCGHVFCFLCVKGVAHQAENVQC 272
           C +C  +      +H P  L+CGH  C  C+  + + +  V+C
Sbjct: 6   CKICFDRFSDTDSEHIPRNLTCGHALCHKCITAMVNNS-TVEC 47


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = +3

Query: 162 CAVCLQKCQH----PTKLSCGHVFCFLCV 236
           C VC +   H    P  L CGH FC  C+
Sbjct: 24  CEVCFEVFNHENRPPKLLPCGHNFCESCI 52


>AF016665-9|AAC71177.1|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 166 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +2

Query: 149 YGI*LCCLLAKMSTSNKTILRSCFLFSLCEGC---SSSSRKCAMCRTEIPLDYFENPVLL 319
           YG+ L C   KM      ++   +     E C      +RKC  CR +  L+   NP L 
Sbjct: 23  YGV-LSCDACKMFFKRTYLMEKYYTCRRQESCYNMDGGNRKCKACRFKKCLEVGMNPELF 81

Query: 320 DKSNLQ 337
            +S  Q
Sbjct: 82  SRSESQ 87


>Z72509-6|CAA96650.1|  223|Caenorhabditis elegans Hypothetical
           protein F32G8.6 protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 255 LDELHPSHKENRKHDRRIVLLDVDIFASKQHSHIPY 148
           LDEL      +  HD  +++ D+++F+  +H  +P+
Sbjct: 85  LDELLNEAVFDEDHDEMVIVKDIEMFSLCEHHLVPF 120


>U21310-4|AAA62518.1|  165|Caenorhabditis elegans Hypothetical
           protein F40H6.1 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 311 VLLDKSNLQYAANVDGVEGFQWYYEGRNGWWKY 409
           +LLD S + Y A V GV GF W+    NG+ ++
Sbjct: 66  ILLDVSLIAYLA-VLGVLGFIWWQVSNNGYTQF 97


>AL021487-5|CAA16350.1|  244|Caenorhabditis elegans Hypothetical
           protein Y45F10B.9 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 159 DCAVCL----QKCQHPTKLSCGHVFCFLCVKGVAHQA 257
           +C +C      + + P  + CGH  C  CV  +  Q+
Sbjct: 175 ECTICYLSYDNEARVPRVMKCGHTICHTCVDRIIEQS 211


>AL021487-4|CAA16351.1|  244|Caenorhabditis elegans Hypothetical
           protein Y45F10B.8 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 159 DCAVCL----QKCQHPTKLSCGHVFCFLCVKGVAHQA 257
           +C +C      + + P  + CGH  C  CV  +  Q+
Sbjct: 175 ECTICYLSYDNEARVPRVMKCGHTICHTCVDRIIEQS 211


>AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical
           protein ZK6.1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 206 LRSCFLFSLCEGCSSSSRKCAMCR 277
           ++ CFL   C   S  +RKCA CR
Sbjct: 42  IKKCFLGEYCFERSPYTRKCAACR 65


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 162 CAVCLQKC-----QHPTKLSCGHVFCFLCVKGVAHQAENV 266
           C +CL +        P  ++CGH +C  C++  A Q + +
Sbjct: 65  CGICLAQYWSTGDMAPRVMNCGHTYCGSCIEIFAEQKDGM 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,735
Number of Sequences: 27780
Number of extensions: 364868
Number of successful extensions: 1233
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -