Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0033.Seq
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical pr...    56   2e-08
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    30   1.1  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    30   1.1  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    28   4.6  
U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    28   6.1  
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF077537-6|AAC26275.1|  140|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical
           protein B0035.3 protein.
          Length = 203

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = +3

Query: 516 GDITKLAVDVIVNAANPSLMGSGGVDGAIHRA 611
           GDITKL+VD IVNAAN  L G GGVDGAIHRA
Sbjct: 31  GDITKLSVDAIVNAANSRLAGGGGVDGAIHRA 62


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 456 TLKKPEGVRRRYENAYSCVQGDITKLAVDVIVNAANPSLMGSGGVDGAI 602
           T+  PE   +RYE   + +  D T+  + VIVN+    LM   G D AI
Sbjct: 679 TISTPEKAEKRYEILLT-LPFDATRKRMSVIVNSQKGPLMYCKGADSAI 726


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 456 TLKKPEGVRRRYENAYSCVQGDITKLAVDVIVNAANPSLMGSGGVDGAI 602
           T+  PE   +RYE   + +  D T+  + VIVN+    LM   G D AI
Sbjct: 679 TISTPEKAEKRYEILLT-LPFDATRKRMSVIVNSQKGPLMYCKGADSAI 726


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 388 YSMFITASFFCLSRYCTFTEAICAFLTLPLIN 293
           Y MFIT S + LS  C F  AI   + +PL+N
Sbjct: 695 YFMFITISIYVLSLVCAFFIAIS--IEVPLLN 724


>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 443 LVKSHFSAQQRELFRNLVIFDVHYSQLFLFIKIL 342
           L+  HFSA  R+   N V FDV  S++  +  ++
Sbjct: 46  LINLHFSASSRDRISNPVFFDVSESRMRRWFSVI 79


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 423 RKMRFNQKACCTLKKPEGVRR--RYENAYSCVQGDITKLAVD 542
           R++RF  +AC  L+ PE +RR  +Y   +   Q D  ++ V+
Sbjct: 677 RRVRFEDEACEVLQNPEELRRIAKYPMTWYLRQSDRLQIEVE 718


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 176 ITPPCTVLPAMAIKGKNKLPSIREFKKGLNI 84
           I  PC +L  + ++G NK+ S R+    LNI
Sbjct: 231 IVAPCMILTPVIMEGLNKVASFRKHINKLNI 261


>AF077537-6|AAC26275.1|  140|Caenorhabditis elegans Hypothetical
           protein F16G10.7 protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 133 PFIAIAGSTVQGGVIHFYGQIVE 201
           PF  I  ST+ G VI +YG+I +
Sbjct: 74  PFNVIPPSTISGSVIDYYGKICD 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,880
Number of Sequences: 27780
Number of extensions: 305080
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)