Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C10f
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-6|CAD59136.1|  128|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    27   6.1  
L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    26   8.1  
AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isofor...    26   8.1  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    26   8.1  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     26   8.1  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    26   8.1  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    26   8.1  

>Z83217-6|CAD59136.1|  128|Caenorhabditis elegans Hypothetical
           protein C10C6.7a protein.
          Length = 128

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 365 ITPFGVSVFVILFTSSNHSSYSKLYDALTNSIKWCTKLIH 246
           I P G+ +F+I  TS N S+Y        +S+ WC+ +++
Sbjct: 90  IHPNGIKMFIISSTSDNFSNYFNCNS--NSSLCWCSHVLY 127


>Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical
           protein C35A5.2 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 365 ITPFGVSVFVILFTSSNHSSYSKLYDALTNS 273
           + PF   VF  L+  S+H   +K+ D LT++
Sbjct: 16  VQPFNYLVFCPLYAHSHHKFLAKIADTLTDA 46


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 138  FPDCKEKVASKISQGSISILHT*YLNLLNASKHLIIH 28
            F   K+ + S +   S  ++ + YLN++ AS+H I H
Sbjct: 928  FEKPKDDITSLLDPTSALLVDSIYLNIVKASQHTIDH 964


>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHR 25
           E++AS++    + + H+ YLN +++ KH I+ R
Sbjct: 145 EEIASRLPGNELWV-HSEYLNTVSSIKHAIVRR 176


>AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isoform 3
           protein.
          Length = 769

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHR 25
           E++AS++    + + H+ YLN +++ KH I+ R
Sbjct: 101 EEIASRLPGNELWV-HSEYLNTVSSIKHAIVRR 132


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHR 25
           E++AS++    + + H+ YLN +++ KH I+ R
Sbjct: 145 EEIASRLPGNELWV-HSEYLNTVSSIKHAIVRR 176


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHR 25
           E++AS++    + + H+ YLN +++ KH I+ R
Sbjct: 145 EEIASRLPGNELWV-HSEYLNTVSSIKHAIVRR 176


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHR 25
           E++AS++    + + H+ YLN +++ KH I+ R
Sbjct: 187 EEIASRLPGNELWV-HSEYLNTVSSIKHAIVRR 218


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHR 25
           E++AS++    + + H+ YLN +++ KH I+ R
Sbjct: 145 EEIASRLPGNELWV-HSEYLNTVSSIKHAIVRR 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,244,217
Number of Sequences: 27780
Number of extensions: 152511
Number of successful extensions: 342
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)