Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C05f
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    90   5e-19
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    90   5e-19
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    48   3e-06
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    30   0.54 
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    30   0.54 
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    28   2.9  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    28   2.9  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U41029-1|AAF99951.1|  479|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z32683-11|CAA83626.1|  142|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical p...    27   6.7  
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical...    27   6.7  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 90.2 bits (214), Expect = 5e-19
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = -1

Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
           K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 5   KKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 90.2 bits (214), Expect = 5e-19
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = -1

Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
           K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 5   KKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +1

Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
           MVLD+D+FR +K GNP+ IR++Q+ RFKD  L D
Sbjct: 1   MVLDIDMFRTEKGGNPEIIRKSQQDRFKDPKLVD 34


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 135 GMGLFCFSFLANLRLIINVFPCRIGTRETRDDVFDNFKEYFYI 263
           G+GL+C S L N+ L++N         +  D  FD ++ Y +I
Sbjct: 95  GLGLWCCSCLLNILLLVN-RTLNFANSKLSDYFFDGYRTYVFI 136


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +2

Query: 56  LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFAL-NNKRLP 196
           L++ P P++PLSV++N      PY    PL  GS     FGQ AL +N+R P
Sbjct: 4   LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNRRYP 48


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 364 DFLEFYLDYRLYRHEISLSRGPC 296
           DF E+Y D R Y +EI    G C
Sbjct: 206 DFYEYYFDLRRYNNEICAFSGVC 228


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 17  FYYIT-FNTFTSLQLELCPSPVTPLSVISNSVSCAHP 124
           FYYIT F  F  + + + P P      I  S+ C HP
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHP 183


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 250 SLKLSNTSSLVSLVPIRHGKTFIIKRKLAKKLKQ--NRPIPQWVRMRTGNTIRYNAKRRH 77
           +LK      + +L P R   T +I+R    KLK+  +R I Q  +    N +    KRR 
Sbjct: 382 ALKKKKKKHMTALKPWRD--TILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRRK 439

Query: 76  WRR 68
           W+R
Sbjct: 440 WQR 442


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 171 LRLIINVFPCRIGTRETRDDVFDNFKEYFYICN 269
           L L +++  C+I T   +DD + + ++Y  +CN
Sbjct: 8   LLLSVSLAACQISTAPCQDDPYTDCRDYAALCN 40


>U41029-1|AAF99951.1|  479|Caenorhabditis elegans Hypothetical
           protein F47G3.3 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 265 VIYLS*INNVNMVLDLDLFRADKDGNPDKIRENQKKRFKDVAL 393
           V+Y+  +  +N+  +L+LF A+K  +P + ++     +K+  L
Sbjct: 163 VMYIKYLQQMNLHAELELFAAEKIAHPHEYQQEGSSYWKEECL 205


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 178 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 59
           K+K+ K +++   +P   +  TGNT   N ++RH R+ ++
Sbjct: 68  KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 26  ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 124
           I F T T +   +C S ++ +  I  SV C++P
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 234 TRRLSSPSCRFGTGRRLLLS 175
           T  +SSPS R  TG+RLL S
Sbjct: 687 TGHISSPSSRLSTGKRLLKS 706


>Z32683-11|CAA83626.1|  142|Caenorhabditis elegans Hypothetical
           protein R07E5.14 protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 189 VFPCRIGTRETRDDVFDNFKEYFYICNLSELN**RQHG 302
           VF   I    T DDV D F EY  I N+  LN  R+ G
Sbjct: 57  VFVTNIHEEATEDDVHDKFSEYGKIKNI-HLNLDRRTG 93


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 38  TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 154
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 38  TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 154
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 38  TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 154
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical
           protein F42A9.9 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 117 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 28
           A   +FD+T+ G   +GQ  +C L+ V+ +
Sbjct: 23  ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52


>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
           protein Y43F8C.12 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   LTLQGFYYITFNTFTSLQLELCPSPVTPLSVISNS 106
           L L G++YI F   T +Q  L  +      +ISNS
Sbjct: 358 LILNGYFYIMFRMGTKIQTSLTAAVYKKTLLISNS 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,664,365
Number of Sequences: 27780
Number of extensions: 167181
Number of successful extensions: 408
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)