Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B01f
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   134   4e-32
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    32   0.24 
AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical ...    28   4.0  
AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRN...    28   4.0  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical p...    27   7.0  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   7.0  
AL132876-16|CAD21672.2|  406|Caenorhabditis elegans Hypothetical...    27   7.0  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  134 bits (323), Expect = 4e-32
 Identities = 65/112 (58%), Positives = 84/112 (75%), Gaps = 2/112 (1%)
 Frame = +2

Query: 83  MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 256
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 257 ACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
             KK+ +CNGT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 68  PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 214
           PTFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 176 IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENIC 355
           ++Q+ G K L  V G+     L  ++     +  CN     +P Y  +  ++   +E+  
Sbjct: 31  VEQKTGVKRLHLVLGVVGLQALY-LIFGHSAQLVCNFMGFVYPAYMSIKAIESSNKEDDT 89

Query: 356 QWLT 367
           QWLT
Sbjct: 90  QWLT 93


>Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical
           protein F47B10.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 415 LETVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 311
           L+ + L L R H  G+GEPLA      L+AL++  LA
Sbjct: 199 LKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 282  LHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 157
            L  +SF+ A T+F RS  E+RP  V  + +    +  + ++P
Sbjct: 1417 LDKDSFIQAITVFIRSLVEQRPAWVSPLAKTMEEYANSESEP 1458


>AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical
           protein T06A1.4 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 41  RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 220
           ++V +   DP F  ++ Q L  FD    A++    DVQ     ++   +  R+ ++ + G
Sbjct: 83  QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142


>AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +2

Query: 98  LNTFDP-FADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR--ACKK 268
           + T DP   +A++     +QD   ++     +G  ++T    +  E  +KKIV   A K 
Sbjct: 79  IRTTDPAHLEAVQHFWMKIQDN-GYIYKSTYSGYYSITDECFIPEEDVVKKIVEGGAEKL 137

Query: 269 EFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 382
               NGT VE  E    +    + RE + +W+ +  +V
Sbjct: 138 TLKSNGTPVEWIEEENYMFRLSEFREKVAEWINRENIV 175


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 327 SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 178
           S S+S   G +   P  + S +H+ TI  R+YS     ++++ ++  R W
Sbjct: 144 STSSSHNFGAAGAGPSSSGSSVHSGTITLRTYSARNGSSLMAPVQDTRRW 193


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 298 LHDRTVARELLLACPHDLLQVIFRGKALHRSQRLTPVSL 182
           + D T   E L   P D L+V+F GK L +S  +  +SL
Sbjct: 30  IEDLTKDVEKLTEIPSDELEVVFCGKKLSKSTIMRDLSL 68


>Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical
           protein K05C4.11 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 179 QQRNGRKTL-TTVQGLSSEYDLKKIVRACKKEFACNG 286
           ++R G K + T V+GL  E D      +CK +F C+G
Sbjct: 290 EERIGFKVVWTAVEGLIGEGDESVNGNSCKDQFMCHG 326


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 327 SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 178
           S S+S   G +   P  + S +H+ TI  R+YS     ++++ ++  R W
Sbjct: 144 STSSSHNFGAAGAGPSSSGSSVHSGTITLRTYSARNGSSLMAPVQDTRRW 193


>AL132876-16|CAD21672.2|  406|Caenorhabditis elegans Hypothetical
           protein Y105E8A.20 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 188 NGRKTLTTVQGLSSEYDLKKIVR--ACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 361
           +G  ++T    +  E  +KKIV   A K     NGT VE  E    +    + RE + +W
Sbjct: 15  SGYYSITDECFIPEEDVVKKIVEGGAEKLTLKSNGTPVEWIEEENYMFRLSEFREKVAEW 74

Query: 362 LTKSGLV 382
           + +  +V
Sbjct: 75  INRENIV 81


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 359 WLTKSGLVKPEQLKV 403
           W+ K+GL KPEQ+K+
Sbjct: 214 WVVKTGLFKPEQMKL 228


>Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical
           protein B0457.6 protein.
          Length = 165

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  RDPTFNRMSIQNLNTFDPFADAIKSSEDDVQD 157
           R PT  +     + TF+ F D  +S E+D+Q+
Sbjct: 19  RPPTQIKRRDDRIRTFNSFDDITESEEEDIQE 50


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = -1

Query: 315 SPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 157
           SP S  +  + L   S  H ++   +        T  + L  F C  RTW +P
Sbjct: 646 SPKSNAAKFLHLDMESISHCQSYLRKPTKSSNLITAANFLTLFGCEKRTWKRP 698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,599
Number of Sequences: 27780
Number of extensions: 216201
Number of successful extensions: 649
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)