Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A12f
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical p...    27   6.0  
AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical
           protein M01B2.6 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 448 PAKVTHNQCPNRILGIFTFNNSGNLSTNHITRIYIA*F 335
           P K   N C  RI+G ++  +   ++ N ++++  A F
Sbjct: 83  PIKTEENTCSKRIIGYYSGTSDSEITINQVSKLTHAIF 120


>U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical
           protein F55G1.15 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 241 IIMFGYTNKWVYYYYF-FRYNHIFDKRFQ*FDVIVLQSTMNRLLF 110
           I+M   T KW++Y+Y+   ++ + D  +   D I L + + ++ F
Sbjct: 40  IVMIMSTLKWLFYFYYTIDFDELVDDHYMTNDYINLAANICQVFF 84


>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 238 IMFGYTNKWVYYYYFFRYNHIFD 170
           + FGY N+W+Y   FF +  + D
Sbjct: 257 VHFGYFNQWLYVNLFFDFCFLLD 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,048
Number of Sequences: 27780
Number of extensions: 219090
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)