Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A06f
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    30   0.53 
Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U61954-4|AAK29804.1|  277|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z22177-5|CAA80150.1|  576|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.      26   8.7  
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    26   8.7  

>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -3

Query: 370 FENLM-YVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQD 194
           F N M ++ ++++    +++    N     KL+V M    ++R    CLS     +  Q 
Sbjct: 507 FHNFMTHLSQNLKNIKVITNKSLPNDTKIDKLLVEMLDTSQLRGISKCLS----QEFMQP 562

Query: 193 VQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTK 92
           ++ L +     T+++   NK   K+N YL++  K
Sbjct: 563 LRVLEVIEAMITVRQFAGNKTVLKMNQYLDELAK 596


>Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical
           protein K10G4.3 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = -3

Query: 394 LXMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSR-LHKIRNSFGCLSVR 218
           + + +++  EN+    + I EF +  D+ NRN +N  K+   + +   KIR      +V 
Sbjct: 93  ILIANKWKLENIEESYEKISEFQRQLDL-NRNNQNNDKIYEAIKKEKEKIRK-----NVY 146

Query: 217 LYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 101
             N+  +D +N+  + F+ T++ H  N    ++ D++E+
Sbjct: 147 ERNEQLRDFKNIP-YGFQPTLELH--NLMQDQIEDFIEE 182


>Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical
           protein M01B2.7 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 201 GILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVF 302
           G LL      H N+ R +CN+LI     C  L+F
Sbjct: 22  GNLLMVLVTLHSNKLRSICNILICVCCFCDLLLF 55


>U61954-4|AAK29804.1|  277|Caenorhabditis elegans Hypothetical
           protein F41H10.5 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 332 LLNMFTNIHQIFKDVLGWH 388
           L+ MF++ H+IF DV+ W+
Sbjct: 79  LILMFSHPHEIFHDVIDWY 97


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 316 DIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKI-PQDVQNLH 179
           D+  R+   +H+ + P S L   RN   CLS   Y+K+  Q+++  H
Sbjct: 316 DVLTRHMSTRHQAIAPPSILGTHRNVRRCLSDGDYHKMAAQELRQRH 362


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 231 HPNEFRILCNLLIGTTSLCLFLVF 302
           H N+ R +CN+LI     C  L+F
Sbjct: 32  HSNKLRSICNILICVCCFCDLLLF 55


>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +1

Query: 229 NTRMNFVSYVTYSSAQQACVCS*YFYYVCPTS*ETPQYVYEHTSNFQRCTGMA 387
           NT +   S +  +SAQ       Y YY  PTS  TP Y Y  T+     TG+A
Sbjct: 2   NTLLALCSLLAVASAQ-------YLYY--PTSYYTPYYYYYPTAAVAGTTGVA 45


>Z22177-5|CAA80150.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK512.6 protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 250 IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 149
           IR +FG     +Y         +H+H F  TI E
Sbjct: 86  IRCNFGAAKTHMYKNYTDPYGKVHMHEFNWTIDE 119


>AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.
          Length = 563

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 250 IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 149
           IR +FG     +Y         +H+H F  TI E
Sbjct: 73  IRCNFGAAKTHMYKNYTDPYGKVHMHEFNWTIDE 106


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -1

Query: 249 YEIHSGVCLCACTTKSHKMFRTYIYIGLRKLLKNICAI 136
           Y +  G+C+C  T     +   ++ +G+   ++N+C +
Sbjct: 75  YIVMIGICICELTQSFTTILSYFMTLGIVYRIENVCGL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,161,541
Number of Sequences: 27780
Number of extensions: 193874
Number of successful extensions: 540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)