Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A05f
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical p...    27   8.8  

>Z78014-1|CAB01428.1|  411|Caenorhabditis elegans Hypothetical
           protein F42E8.1 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 211 INNNPKIVLIQFIGKFIKFVDGSKIENKFVIIFN 110
           +NN PK   IQ IGK I  ++GS  E+ F++ +N
Sbjct: 113 VNNFPKNERIQAIGKLIGHLEGS--ESLFLMAYN 144


>Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.13b protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 319 LK*LFFNNVLNSLCNFF 269
           L+ L+FNNV N LCN F
Sbjct: 134 LQMLYFNNVSNILCNHF 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,424,756
Number of Sequences: 27780
Number of extensions: 87142
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)