Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0023.Seq
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    97   4e-21
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    26   7.8  
L39927-1|AAA98784.1|  344|Caenorhabditis elegans cathepsin B-lik...    26   7.8  
L39896-1|AAA98786.1|  344|Caenorhabditis elegans cathepsin B-lik...    26   7.8  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    26   7.8  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    26   7.8  
AF016426-3|AAB65346.1|  344|Caenorhabditis elegans Cysteine prot...    26   7.8  
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    26   7.8  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 97.1 bits (231), Expect = 4e-21
 Identities = 52/124 (41%), Positives = 73/124 (58%)
 Frame = -3

Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
           V  I FT K     +KT Y      +  + E +          +L+EVV+KLIPDSI KD
Sbjct: 135 VFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKD 194

Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSERPEGYEPPV 18
           IEK C  +YPL++V IRKVK++KRP+ ++ +L +LH          G+K +RP+ YEPPV
Sbjct: 195 IEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH-GDSITVGADGEKVDRPDDYEPPV 253

Query: 17  QESV 6
           Q+ V
Sbjct: 254 QQEV 257


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 101 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 241
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 191 SRCPWQWSQESTCSPPP*VQSCDVACNDFTHFLSDCSDLSVLGRSTSCVGSRSP 352
           S C  Q S  S+CS P  +QSC  +C         C    +   S+SC  +++P
Sbjct: 194 SNCNNQCS--SSCSTPICIQSCQSSCQQACQ--PTCQPQCMPSCSSSCTSNQAP 243


>AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical
           protein H01M10.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 168 SARCLHPKGESVEEAPFRDLEVDGT 94
           SA C  P+  SV E PF  +  DGT
Sbjct: 78  SASCSQPRAPSVYEDPFVAVAADGT 102


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 95  VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 241
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTP 85


>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 245 VQSCDVACNDFTHFLSDCSDLSVLGRSTSCVGSR 346
           VQS DVAC  +++  +   DL   G S   +G +
Sbjct: 543 VQSYDVACKQWSNMSTAPVDLKRFGHSVHVIGQK 576


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 245 VQSCDVACNDFTHFLSDCSDLSVLGRSTSCVGSR 346
           VQS DVAC  +++  +   DL   G S   +G +
Sbjct: 543 VQSYDVACKQWSNMSTAPVDLKRFGHSVHVIGQK 576


>L39927-1|AAA98784.1|  344|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 344

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +2

Query: 146 FGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVACNDFTHFLSD 295
           FGCK  +   C    +   W    E T   P  V SC    N  T +L D
Sbjct: 181 FGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKNNYATPYLQD 230


>L39896-1|AAA98786.1|  344|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 344

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +2

Query: 146 FGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVACNDFTHFLSD 295
           FGCK  +   C    +   W    E T   P  V SC    N  T +L D
Sbjct: 181 FGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKNNYATPYLQD 230


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 95  VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 241
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTP 85


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 245 VQSCDVACNDFTHFLSDCSDLSVLGRSTSCVGSR 346
           VQS DVAC  +++  +   DL   G S   +G +
Sbjct: 543 VQSYDVACKQWSNMSTAPVDLKRFGHSVHVIGQK 576


>AF016426-3|AAB65346.1|  344|Caenorhabditis elegans Cysteine
           protease related protein 5 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +2

Query: 146 FGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVACNDFTHFLSD 295
           FGCK  +   C    +   W    E T   P  V SC    N  T +L D
Sbjct: 181 FGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKNNYATPYLQD 230


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 21  GRLVALRPFRLVSGFPLASTAFA--VKFHQLRDLETGPLQHFHLSDANIAQR--VDAMAG 188
           G+ +A RPF+LV+G     TAF        +  L    +    L D  I  R  +D +  
Sbjct: 478 GQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRCNIDDINA 537

Query: 189 LLDVL--GNGVRNQL 227
             DVL  G G+R++L
Sbjct: 538 AFDVLRKGEGLRSRL 552


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 215 QESTCSPPP*VQSCDVACNDFTHFLSDCSDLS 310
           Q  +  PPP +    V CNDF    S C D+S
Sbjct: 61  QVLSTGPPPGL--APVQCNDFDSCYSSCDDIS 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,651
Number of Sequences: 27780
Number of extensions: 158526
Number of successful extensions: 460
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)