Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0017.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-6|AAC67427.1|  484|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   3.6  
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra...    28   3.6  

>AF098986-6|AAC67427.1|  484|Caenorhabditis elegans Hypothetical
           protein C36C9.5 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
 Frame = +1

Query: 220 HRL-INVHLVLSRTGDHNSGTYPCGPTYYPGTGN-YANFE--------NLHAWXLLHTDI 369
           HR   NV   L R G HN  TY       PG    Y N          N H + +LH+ I
Sbjct: 284 HRTYFNVTSGLPRPG-HNGSTYSMLHNSMPGAQRAYFNLNSGLPCPEHNAHTYNMLHSSI 342

Query: 370 PSSWKMSMKALST 408
           P S++  +  +S+
Sbjct: 343 PGSYRSHLNLISS 355


>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1753 IVISEAGDRNVGEYVCSATNDFGTG 1777


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1846 IVISEAGDRNVGEYVCSATNDFGTG 1870


>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1846 IVISEAGDRNVGEYVCSATNDFGTG 1870


>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1753 IVISEAGDRNVGEYVCSATNDFGTG 1777


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1846 IVISEAGDRNVGEYVCSATNDFGTG 1870


>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1846 IVISEAGDRNVGEYVCSATNDFGTG 1870


>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
            proteoglycan protein.
          Length = 2481

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 241  LVLSRTGDHNSGTYPCGPTYYPGTG 315
            +V+S  GD N G Y C  T   GTG
Sbjct: 1845 IVISEAGDRNVGEYVCSATNDFGTG 1869


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,383,260
Number of Sequences: 27780
Number of extensions: 138425
Number of successful extensions: 274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)