Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome regu...    36   0.015
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 2, isoform b
            protein.
          Length = 965

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -3

Query: 398  LSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTG-EGEQVLVSRL 246
            L NPARV+  Q + ++I +   ++P+K +  GGI++ +    E E+ LVS +
Sbjct: 886  LQNPARVIPAQRQLISISDARAYSPMKPLYKGGIIVADRVDKEREEKLVSEV 937


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 404 EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE 267
           E L +P R   ++ + + I E  G  PL+ +  GG+     T EGE
Sbjct: 161 EALGHPGRTTTKKPRKVDIFEEEGLKPLQAVA-GGVHSAVLTSEGE 205


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 372 TAIEEFNYCRGFRFHSFKGYHY 307
           T  +EFNY  G + HSF  + Y
Sbjct: 376 TCFQEFNYVHGVKTHSFIAWPY 397


>Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical
           protein F57G8.5 protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 23  YKQ*ISLVTISRVSKIXNLVIITIVQYIVYSIRYI 127
           Y+  ++ VTI  V+ I  ++ ITI  +++  I ++
Sbjct: 136 YENAVTPVTIGLVTAIGEIIAITIASFLILDISFV 170


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  YKQ*ISLVTISRVSKIXNLVIITIVQYIVYSIRYI 127
           Y+  +  VTI  V+ I  ++ +TI  Y + +I ++
Sbjct: 145 YENALMPVTIGLVTAIGEIIAVTIASYFILNISFV 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,269,270
Number of Sequences: 27780
Number of extensions: 150181
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)