Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0038
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    99   2e-21
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    99   2e-21
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
 Frame = +1

Query: 19  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 198
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 199 RHIYIRSPVGVKTVTKIFGG---ANVMELHLHISAGH 300
           RH+Y R P G+    K++GG     V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 416
           G KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 81  GNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
 Frame = +1

Query: 19  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 198
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 199 RHIYIRSPVGVKTVTKIFGG---ANVMELHLHISAGH 300
           RH+Y R P G+    K++GG     V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 416
           G KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 81  GNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 213 SLTCWSQDCHQDLRGRKRNGVTPSHFCRSSGSIARKAL-QSLEALKLVEKVQD 368
           +LTC    CH+ +     N      FCR+  +I    + + L+   L+E ++D
Sbjct: 24  NLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFALIEVIED 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,501
Number of Sequences: 27780
Number of extensions: 221284
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)