Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0030
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    28   3.7  
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    28   3.7  
Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 323 ISRCVAHLRCKCL-WAPVTT*HQVGCELVIHLSN 421
           I+  VA  +C C  W   +T   +GCELV  L N
Sbjct: 26  INLSVAERQCICASWEKASTQSDIGCELVARLLN 59


>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 PPISAVSTNAFRFEGWGSRCNYTE 308
           PP     T+A R+E WG R  +TE
Sbjct: 398 PPAELFDTDASRYERWGDRKFFTE 421


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 PPISAVSTNAFRFEGWGSRCNYTE 308
           PP     T+A R+E WG R  +TE
Sbjct: 405 PPAELFDTDASRYERWGDRKFFTE 428


>Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical
           protein C44F1.2 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 22  MHLYAYRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEG 135
           MHL  +RC G+R  QA   + ++  T + FT +  G+G
Sbjct: 87  MHLKLFRCPGIR--QACIEYESQYLTPKQFT-ELGGKG 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,711
Number of Sequences: 27780
Number of extensions: 237053
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)